Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12j03
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.57 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.4  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    20   9.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 150 CWCKPGLIRDSIAHKCVKECP 88
           C CKPG   D    +C  ECP
Sbjct: 247 CHCKPGYQADVEKQECT-ECP 266



 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 194 QIVSKAQFGPGSYWSGGHSAELIPRH 271
           Q  ++   G   + +G HS E  P H
Sbjct: 260 QECTECPIGKFKHEAGSHSCEACPAH 285


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -1

Query: 156 CDCWCKPGLIRDSIAHKC---VKECPKYDEILD 67
           C   C+PG+I+      C     +C +Y+ + D
Sbjct: 539 CSLPCEPGMIKKQQGDTCCWVCDQCEEYEYVYD 571


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 156 CDCWCKPGLIRDSIAHKCVKECPKYDE 76
           C   C+PG+I+      C   C + +E
Sbjct: 449 CSLPCEPGMIKKQQGDTCCWVCDQCEE 475


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 292 KPKIHLASFHSQR 330
           +PKIH+ S H  +
Sbjct: 149 RPKIHVFSLHDNK 161


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 309 KMNLWFVLLFIISCLGIS 256
           +  L++ +  II C+GIS
Sbjct: 242 RKTLFYTVNIIIPCMGIS 259


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 309 KMNLWFVLLFIISCLGIS 256
           +  L++ +  II C+GIS
Sbjct: 242 RKTLFYTVNIIIPCMGIS 259


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 309 KMNLWFVLLFIISCLGIS 256
           +  L++ +  II C+GIS
Sbjct: 238 RKTLFYTVNLIIPCMGIS 255


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 31

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 285 LFIISCLGIS 256
           LF+++CLGI+
Sbjct: 5   LFMVACLGIA 14


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 285 LFIISCLGIS 256
           LF+++CLGI+
Sbjct: 5   LFMVACLGIA 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,370
Number of Sequences: 438
Number of extensions: 1907
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)