Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12j01
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    29   0.77 
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   4.1  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   7.2  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   9.5  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   9.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 216 FQKSNMYLTT*LFSIILAGSSINQDIA 296
           FQK  +YL   LF II++G++ NQ  A
Sbjct: 193 FQKYGLYLIPILFLIIMSGNNANQQAA 219


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = -1

Query: 442 FEVVVNDKLIYS--KLKTMALP-DYGE-VAQVVHDVSKGQEPREIKGEQPIN 299
           FEVV N+ +I +  K +T+  P  Y + V ++ HD  + ++   +KG  PIN
Sbjct: 60  FEVVNNENIITTTPKHQTVITPKSYRKSVKRIKHDAPQNEDIPVMKGLAPIN 111


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 588 LIEIHLCTIHFNKFYYYYII 647
           +IEI+L  +H   +YYYY++
Sbjct: 170 IIEINLL-VHVTMYYYYYLV 188


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 69  RRCSKHKKNKKLFAQDYQL 13
           RRC+KH   + +F +D++L
Sbjct: 352 RRCAKHTSWQVIFTEDFEL 370


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 506 KIMTGNEEKSFIPKVHVEYWVF 441
           K+ +    +S  P++HVE W+F
Sbjct: 237 KLFSREAYQSIFPRMHVEGWIF 258


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 503 F*LIPISSYNPYFTILESLIHR*LNLKVSH*NTFMHN 613
           F LIPISS  P+ T  ESL    L   +SH  +F  N
Sbjct: 15  FLLIPISSALPFQTFEESLK---LKSNISHTGSFFAN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,322
Number of Sequences: 5004
Number of extensions: 53488
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)