Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12i16
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.37 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.86 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.86 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 565 IEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELFPQND 386
           + W  +  GG +D++ P      P R +K ++       +NSA + F GT P  +  +N+
Sbjct: 85  MRWNVSDYGGVRDLRIP------PHRLWKPDVLM-----YNSADEGFDGTYPTNVVVKNN 133


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 HVMKTKIVLRK*FYRVCTNKIIFGRVMM 451
           H++   +V+R+  Y+  TN+   GRV+M
Sbjct: 351 HILPRLLVMRRPQYKFETNRYSSGRVLM 378


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 HVMKTKIVLRK*FYRVCTNKIIFGRVMM 451
           H++   +V+R+  Y+  TN+   GRV+M
Sbjct: 351 HILPRLLVMRRPQYKFETNRYSSGRVLM 378


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 292 SYLCHHSYCYRYRCSARSHNT 230
           S+L  HS  Y+YRC+  ++ T
Sbjct: 34  SHLKSHSNVYQYRCANCTYAT 54


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 451 VERFLAKYLPCIVVLG 498
           V   ++ Y+PCIV+LG
Sbjct: 195 VSSSISFYVPCIVMLG 210


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 576 YLLK*NGKQHVEVDIKTLSILGEI 505
           Y+L  +GK H     K L+ILG I
Sbjct: 342 YILNNDGKWHNIYSEKGLNILGNI 365


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 576 YLLK*NGKQHVEVDIKTLSILGEI 505
           Y+L  +GK H     K L+ILG I
Sbjct: 342 YILNNDGKWHNIYSEKGLNILGNI 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,534
Number of Sequences: 438
Number of extensions: 4360
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)