Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12i13
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.54 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 194 FLLTYIDTLLTSPIHYLFTKNIYENFFNKPKV--FISNSRFLI 316
           F  T  D +L       F K+IYE + N+P V  + + S FL+
Sbjct: 42  FFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLL 84


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 185 Y*NRFPFEIPPLCVGLVRRRNIFRCVNLRLDIKRRSFLLI 66
           Y   FP E       ++RR+ +F  VNL L     SFL +
Sbjct: 213 YKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCV 252


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 368
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 57  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 89


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 368
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 25  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 469  PLVPDVIRYIIHQ*N*ITISLN 534
            P++P+  R+I    N IT+ LN
Sbjct: 1461 PIIPEAARFIEVATNSITLHLN 1482


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 414 TKRHGAFCFLSAFSP 370
           T RH A C+LS   P
Sbjct: 311 TTRHNATCYLSHVDP 325


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 414 TKRHGAFCFLSAFSP 370
           T RH A C+LS   P
Sbjct: 17  TTRHNATCYLSHVDP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,949
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)