Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12i09
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.027
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.76 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   9.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 362 SPTDPYHQSLFAKLENPDVVYQNFVKRLAKYHF 264
           +PTD Y +S F  L+NP V  + F+   A   F
Sbjct: 540 TPTDSYIRSFFELLQNPKVSNEQFLNTAATLSF 572


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 302 YQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREEL 153
           ++ F + +   H+QVKA+++ +++ + S   +         K  E  EEL
Sbjct: 254 FEYFTRTIPSDHYQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELEEL 303


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 10  LCLFIANILFILASL 54
           LC+F+A ++FI++ L
Sbjct: 177 LCVFVAGVVFIVSGL 191


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 303 LSEFREEIG*VSFSSQSNYPGY 238
           LS F ++IG  ++ +Q N  GY
Sbjct: 209 LSYFTQDIGLAAYYAQVNLAGY 230


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 324 FCK-QRLMIWVRWTQIHFEGHC 386
           FC  +R+++  R  Q H E HC
Sbjct: 226 FCAARRIVLEERRAQSHLEAHC 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 382 WPSKWI*VQRTHIINRCL 329
           W SKW+ +  +    RCL
Sbjct: 69  WQSKWLSINHSACAIRCL 86


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 128 ETGDTKYDTELESQRHLLACLLKEF 54
           +  +  +D E E  +    C+LK+F
Sbjct: 46  DINEVNFDVEDEKPQRYNECILKQF 70


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 128 ETGDTKYDTELESQRHLLACLLKEF 54
           +  +  +D E E  +    C+LK+F
Sbjct: 46  DINEVNFDVEDEKPQRYNECILKQF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,933
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)