Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12i07
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    25   0.94 
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    25   0.94 
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    25   0.94 
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    25   0.94 
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    25   0.94 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    25   0.94 
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    25   0.94 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.94 
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    25   0.94 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   6.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.8  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  +Y
Sbjct: 308 SNNYNYNNYNNNYKPLY 324


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 241 SNCLNYINYNFNYLTIY 191
           SN  NY NYN NY  ++
Sbjct: 319 SNNYNYNNYNNNYKPLH 335


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 241 SNCLNYINYNFNY 203
           SN  NY NYN NY
Sbjct: 306 SNNYNYKNYNNNY 318


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 241 SNCLNYINYNFNY 203
           SN  NY NYN NY
Sbjct: 317 SNNYNYKNYNNNY 329


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 298 MIFFICLCNSSINP 257
           ++F++  CNS+INP
Sbjct: 46  VLFWLGYCNSAINP 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 298 MIFFICLCNSSINP 257
           ++F++  CNS+INP
Sbjct: 494 VLFWLGYCNSAINP 507


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 124 SNYNFINMNRSPTCRKSIYYYQDNYL 47
           SNYN  N N +    K + YY  NY+
Sbjct: 92  SNYNNYNNNNNYNNYKKL-YYNINYI 116


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 461 LSKFLFNPKGLLDPVW 508
           L +  F+ +GLL PVW
Sbjct: 213 LEELGFDTEGLLPPVW 228


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 133 NILSNYNFINMNRSPTCRKSIYYYQDNYL 47
           ++ +NY + N N      K +YY   NY+
Sbjct: 84  SLSNNYKYSNYNNYNNYNKKLYY--KNYI 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 133 NILSNYNFINMNRSPTCRKSIYYYQDNYLTIIYFLYFFLNPI 8
           ++ +NY + N N       +   Y +NY      LY+ +N I
Sbjct: 317 SLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,976
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 35
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)