Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12h24
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 206 LNNQLSILNYKKTITRTNPRRVCISMGSIW 295
           L + L  +N  K+IT   P + C   GSIW
Sbjct: 298 LTSALQEMNKSKSITE--PPKNCADSGSIW 325


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 593 KDFELNYRGDLWAHN 549
           KDF++ ++  LWA N
Sbjct: 119 KDFDIFFKTALWAKN 133


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 593 KDFELNYRGDLWAHN 549
           KDF++ ++  LWA N
Sbjct: 119 KDFDIFFKTALWAKN 133


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 124 LLYDHKRLSSELNES 168
           LLY+H RL S+ N S
Sbjct: 219 LLYNHARLMSQDNHS 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,465
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)