Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12h09
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.48 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.1  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.7  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   7.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = -1

Query: 237 DPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFS-KG 61
           D   + G L         D R + G  P+QQ+   E C     + +    +   C   KG
Sbjct: 153 DELSQPGSLNGYGSSDGCDARKKKGPTPRQQE---ELCLVCGDRASGYHYNALTCEGCKG 209

Query: 60  YCSQSLIYEEASDCPEGNDC 1
           +  +S+       C  GN+C
Sbjct: 210 FFRRSITKNAVYQCKYGNNC 229


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 318 LLFCAMCILVYGNSEDDFCEIDSIEQEDPCRR 223
           LLF AM  ++    ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 318 LLFCAMCILVYGNSEDDFCEIDSIEQEDPCRR 223
           LLF AM  ++    ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -1

Query: 165 GLCPKQQKDGIECCYGVSVKETRCRKHGGEC 73
           G+C +  +     C G S ++  C K    C
Sbjct: 77  GICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -2

Query: 161 SVLSSKKTESNAVTECP*KRPDVGSTAENVSRKATAVNL*YMKKLQTV 18
           ++ +  +TESNA +     R   G+T E +  +    N+   ++ Q++
Sbjct: 222 TIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSL 269


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/31 (22%), Positives = 13/31 (41%)
 Frame = -1

Query: 135  IECCYGVSVKETRCRKHGGECFSKGYCSQSL 43
            + C  G +  ET+ + +   C  K   +  L
Sbjct: 1709 VSCASGCTAVETKSKPYKFHCMEKNEAAMKL 1739


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 66 KGYCSQSLIYEEASDCPEGNDC 1
          KG+  +S+       C  GN+C
Sbjct: 5  KGFFRRSITKNAVYQCKYGNNC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,993
Number of Sequences: 438
Number of extensions: 2242
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)