Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12g23
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    44   1e-06
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 282 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQL--IG 109
           ++ +L ++T   C + +GN  I+ + +C   + G+  C  DSGGP+   +  +++L  IG
Sbjct: 311 QKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVNIG 367

Query: 108 ITSFGSAQGCQRGHPAGFARVTSFNSWI 25
           I S+G+  G    +P G  +V S+  WI
Sbjct: 368 IISWGAECG---KYPNGNTKVGSYIDWI 392


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 409 LHQQHPAHQPSQWKQQ 362
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 124 PSTDRYHIVRISSRL 80
           P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 302 EPTTNKNAK*ASRS 261
           EP TNKN K  SRS
Sbjct: 239 EPGTNKNGKFFSRS 252


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 468 SYNMDTLHNDVAIINHNHVGFTNN 397
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 468 SYNMDTLHNDVAIINHNHVGFTNN 397
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = +2

Query: 110 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 256
           P+S  +PP P  +  P++      P  P    +       P V   T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 334 RLRKDLRCCFGSQQPTKTPSEPPGHYQRRLRP 239
           RLR++     G+ +P   P   P H + R  P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQPRPPHPRLRREP 146


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 282 VFVGCWLP 305
           VFV CWLP
Sbjct: 335 VFVVCWLP 342


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 282 VFVGCWLP 305
           VFV CWLP
Sbjct: 335 VFVVCWLP 342


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  GVEGCDSGEAGRVASLATLS*SERC 105
           GV+GCD    GR      ++  ERC
Sbjct: 109 GVDGCDLMCCGRGYKTQEVTVVERC 133


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 121 STDRYHIVRISSRLPERPPCRLRQSHILQLL 29
           +T R        RLP  PP R+R+   + LL
Sbjct: 624 TTKRDGTQETEERLPPLPPKRIRKMPSMPLL 654


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  GVEGCDSGEAGRVASLATLS*SERC 105
           GV+GCD    GR      ++  ERC
Sbjct: 110 GVDGCDLMCCGRGYKTQEVTVVERC 134


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 282 VFVGCWLP 305
           VFV CWLP
Sbjct: 335 VFVVCWLP 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,873
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)