Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12g14
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 448 VKLTPKCFW--SGFNVYNPDFIKLAISMGLDM 537
           +K+   C++  SG  +  PD   L + MGL M
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCVYMGLSM 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 264 SWNSLTSFKKPLRIFQ 311
           SWN L   K+P+++F+
Sbjct: 432 SWNPLMQPKQPIKLFE 447


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 327 SQFIYIEKSSKVF*NWSSYSK 265
           S+F Y+ K +K    W SYS+
Sbjct: 530 SEFAYLGKPTKEDSEWPSYSR 550


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 587 PMTLLELQKLIDRNRVDISKPIDIA 513
           P T LE+QK I + + D+ + I  A
Sbjct: 157 PQTYLEIQKXIKKAKEDVIEVIQKA 181


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 327 RIIVGCSNNTTIFLNRCNNLFTCPLYFYINF 419
           +II   SN T    N  NN     LY+ IN+
Sbjct: 302 KIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 416 FLQQICQLHHQLN*HQNAFGQDSMCITQILSSWQYQW 526
           +LQQ  Q HHQ +  ++A  Q+       L   Q+Q+
Sbjct: 98  YLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQF 134


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 388 SLAHCTSILIFAANMSAP 441
           SL+H T  L+F  NM+ P
Sbjct: 152 SLSHTTQDLVFIWNMTDP 169


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 559 NFCNSKSVIGGYSLFK 606
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 559 NFCNSKSVIGGYSLFK 606
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 234 ILHQCCNTWLFSRSR 190
           ++  CC  W+FS S+
Sbjct: 72  LVGNCCVIWIFSTSK 86


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 234 ILHQCCNTWLFSRSR 190
           ++  CC  W+FS S+
Sbjct: 72  LVGNCCVIWIFSTSK 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,165
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)