Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12g07
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 419 NEYGENIFYAWSTDPAFTVSGRDPVDKWYSEINNHKFGREPTNLDSGHFSQVIWEE 252
           N Y    F+  S+   F VS R   D+  S+ + H+F   P   + GH +  + +E
Sbjct: 269 NGYRTLFFHPLSSRREFAVSTRILRDENLSQNSYHEFQILPERGELGHCTASVMDE 324


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 431 VQSGLFWPTLSPILRRIY 484
           +QSG+F   LSP+ + +Y
Sbjct: 247 LQSGIFGMALSPLTQNLY 264


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 278 VQNLNSWVLDQIYDY*SRCTIYRQDHAQKR*MLDPWTKRKI 400
           VQ L++WV  ++ +      I   D  +KR   DP+ KR I
Sbjct: 110 VQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDPFLKRLI 150


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/49 (20%), Positives = 20/49 (40%)
 Frame = -1

Query: 356 RDPVDKWYSEINNHKFGREPTNLDSGHFSQVIWEETREIGVGVAKSKEG 210
           ++ +D     + NH       +   G  S  +W+    +G+   K K+G
Sbjct: 413 QEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPK-KDG 460


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 373 AGSVDQA*NIFSPYSF*SLCSV 438
           AGSV+   +IF  Y++ ++C +
Sbjct: 488 AGSVEALLDIFDTYTYDTICQL 509


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 418 TNMAKIYFTLGPRIQHSPFLGVILSINGTARLIIINLVENPR 293
           TN+   +F +  + +H+ F+  IL+ +  +  ++I    +PR
Sbjct: 260 TNIQLEHFEMKIKRKHNVFVNNILAASACSLFVVIFHFAHPR 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,160
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)