Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f21
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.55 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.7  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   5.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.2  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   5.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   6.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.0  

>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 9   KSITIFFSVICALYYVCFLLTSLLCMAEEVYYYRV*IPSSDML*LDTRLYPL--LVSW 176
           +++ IF   I +L+ +  L    + + + VY+Y +  P+  +L +   LYPL  L+SW
Sbjct: 62  RTVVIFILRIVSLF-LWILADPAILLVQSVYWYFIRAPARFILMVGITLYPLYVLLSW 118


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = -1

Query: 627 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 448
           C+ +      Y   +GK YC   +    F  RC  C G   + F      Y NG  Q W 
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264

Query: 447 GKCQQCYDSYGNFVCR 400
             C   Y  +   +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2   ILKINYNFLFSYMCTVLCVFSSN-FSSVYGGGGILL 106
           ILK   N + + + + +C+ + N FSS  GGGG +L
Sbjct: 116 ILKAGGNAVDAAIASGICIGAVNSFSSGIGGGGFML 151


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 474  GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 343
            G+GT    Q +   C D   ++VCRD    I ++ST  +  +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 509 EKNASALVVIDMEMAHFNVGKENVNN 432
           +K+  + +++D+E A  N  +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 394 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 278
           HR   AD  D+N   +   +R  S+I++ LQI   DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 467 PFPYLLQQGPKHFSPRPGHGTQRS 538
           PFP+ +QQ P H  P     T  S
Sbjct: 333 PFPFSIQQPPLHLEPPLSSNTLNS 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,517
Number of Sequences: 5004
Number of extensions: 69632
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)