Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f21
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0799 + 27809301-27811550 35 0.046
08_02_0168 - 13640894-13641973 34 0.11
12_02_0528 + 20059613-20061472 33 0.19
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 32 0.43
05_01_0212 + 1601861-1603600 31 0.57
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 31 1.00
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 29 2.3
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 29 3.0
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 29 4.0
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.0
10_08_0406 - 17688069-17690643,17691065-17691132 28 7.0
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 28 7.0
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 28 7.0
05_03_0170 - 9132207-9133010,9133232-9133894 28 7.0
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 27 9.3
03_06_0035 - 31201115-31203646 27 9.3
>03_05_0799 + 27809301-27811550
Length = 749
Score = 35.1 bits (77), Expect = 0.046
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 552 PNQFHDRCVPCPGL--GEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDG 394
P ++H CVPCP G G C Y +G +CW Q Y +C+DG
Sbjct: 302 PRKYHYSCVPCPDFRKGVCRRGDMC-EYAHGVFECWLHPAQ-----YRTRLCKDG 350
>08_02_0168 - 13640894-13641973
Length = 359
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 534 RCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCR 400
R P PG+G CF C T W GKC C + + VCR
Sbjct: 279 RAFPKPGMGMVCFR--CGDAHRRTECRWAGKCSICSQDHKDVVCR 321
>12_02_0528 + 20059613-20061472
Length = 619
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 552 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDGI 391
P ++H CVPCP G C G C Y +G + W Q Y +C+DG+
Sbjct: 209 PRKYHYSCVPCPEFKKGAGCRRGDMC-EYAHGVFESWLHPAQ-----YRTRLCKDGV 259
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 31.9 bits (69), Expect = 0.43
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Frame = -1
Query: 579 KCYCADGFVPNQFHDR-CVPCPGLGEK----CFGPCCNRYGNGTLQCWQGKCQQCYDSYG 415
+C C++G+ N + D C +K C+G C N G T C +G ++
Sbjct: 286 RCRCSNGYQGNPYLDSGCTDIDECQDKEKYGCYGDCTNTIGGYTCLCPRGTIGNVHEKN- 344
Query: 414 NFVCRDGIDQILLISTTQIVMGSALILGIIATFILLYKLCAATTIGPFGGEFEQN 250
VCR D+ +G + + + F L +L I FEQN
Sbjct: 345 --VCRPK-DKFTFALKAVTGVGLGVFMSVFMAFWLRLRLQKRKLIRTRQKFFEQN 396
>05_01_0212 + 1601861-1603600
Length = 579
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = -1
Query: 552 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCW----QGKCQQCYDSYG 415
P ++ CVPCP G C G C Y +G +CW Q + + C D G
Sbjct: 226 PRRYSYSCVPCPEFRKGGSCRKGDAC-EYAHGVFECWLHPAQYRTRLCKDEVG 277
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = -1
Query: 579 KCYCADGFVPNQFHDRCVPCPGLGE-------KCFGPCCNRYGNGTLQCWQG 445
+CYC+DG+ N + D C + E C+G C N G QC G
Sbjct: 204 RCYCSDGYEGNPYVDG--GCRDIDECKSPHIYPCYGDCKNTRGGYDCQCHHG 253
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 103 TIVYKSRVQICYSWIHGYIRCWCPGIPW 186
T+VYKSR + + G IRC GI W
Sbjct: 436 TLVYKSRGEYAKKCVVGRIRCVLDGITW 463
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = -1
Query: 579 KCYCADGFVPNQFHDR-CVP---CPGLGE-KCFGPCCNRYGNGTLQCWQGKCQQCYDSYG 415
+C C+ G+ N + D C C E CFG C N G+ T +C G + G
Sbjct: 301 RCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPG-------TSG 353
Query: 414 NFVCRDGIDQILLISTTQIVMGSALILGI-IATFILLYKL 298
N +G + T + + ++ G+ + F+LL+ L
Sbjct: 354 NATQENG-----CLPTDKFTLALKVVTGVSVGVFLLLFML 388
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 543 FHDRCVPCPGLGEKCFGPCCNRYGN 469
F CV P LGE GPC +R G+
Sbjct: 331 FQHHCVWAPVLGELPLGPCSHRQGS 355
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 446 PCQH*SVPFPYLLQQGPKHFSPRPGHGTQRSWNWFGTNPSAQ*HFPFIHSYSTPMQFIA 622
P Q+ S PF Y P FSP P + + + + P + H P + Y+ P + A
Sbjct: 193 PYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQA 251
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 122 EFRYAIAGYTAISVVGVLEYLGGASRNLSSTYTWRLPIDRRWLFCSNSPPKGPMVVAAH 298
EFRY + G T I + VL L A LS ++RR CS + P+VVAA+
Sbjct: 197 EFRYYLLGLTLIYIFTVLWSLCLAKLVLSL-------LNRRLASCSLHTARNPLVVAAY 248
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = -1
Query: 627 CFAINCIGVEYECIKGKCYCADGFVPNQF-----HDRCVPCPGLGEKCFGPCCNRYGNGT 463
C + N Y+ + KC+C+DG+ N + HD C+G C N G+
Sbjct: 279 CLSANSFCHAYD-LGYKCHCSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHI 337
Query: 462 LQCWQG 445
C +G
Sbjct: 338 CDCPRG 343
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 584 KGNVTAPMDSYQTSSMIVVCHVQA*EKNASAL 489
KG+++ M +QTS + CH+ + EK L
Sbjct: 347 KGSISISMSLHQTSFCFICCHLTSGEKEGDEL 378
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 464 VPFPYLLQQGPKHFSPRPGHGTQRSW 541
VP P L +Q P+ R G GT +SW
Sbjct: 20 VPVPELHRQAPRRRGRRGGGGTVKSW 45
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 621 AINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLG 508
A +C + CI+ YC D FVP + R V C +G
Sbjct: 723 ADDCFLLASRCIR---YCPDLFVPTEMFPRLVDCAMVG 757
>03_06_0035 - 31201115-31203646
Length = 843
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 409 CL*RRHRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHRAFWGRIRTK 251
C RRHRP N S+ + +NS S++ T ++ R +G RTK
Sbjct: 447 CCRRRHRPGWQKTNSFQSWFLPLNSTQSSFMSTCSRLS----SRNRFGSTRTK 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,533,107
Number of Sequences: 37544
Number of extensions: 471953
Number of successful extensions: 1252
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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