Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f19
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     35   0.068
06_01_1179 + 10137652-10138038                                         32   0.48 
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           29   3.4  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    29   4.5  
12_01_0373 + 2897874-2898911                                           29   5.9  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   7.8  

>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = -3

Query: 679 TIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEV 500
           T  A+   V   V ES+  AS+ E   D+ +V  K +    +V   +  ES   +S   V
Sbjct: 494 TEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSV 552

Query: 499 INDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 374
            + E SV +    +AP  +V +  P   ++ ASA E+I D   V
Sbjct: 553 ASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595


>06_01_1179 + 10137652-10138038
          Length = 128

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +3

Query: 372 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 548
           +  A++ I++ A AP E      + +  AAT    PT  S+      A AP     TS  
Sbjct: 12  ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69

Query: 549 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 668
             AG   + + PT  +++++ VA  P + +   F + AGA
Sbjct: 70  APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -3

Query: 676 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 497
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 496 NDEV 485
           ++E+
Sbjct: 333 SEEI 336



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 571 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 392
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 391 NDE 383
           ++E
Sbjct: 333 SEE 335


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/108 (21%), Positives = 42/108 (38%)
 Frame = +3

Query: 375  TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 554
            T+ S   TS + +P   S    + +    + V  PT  +   TS A +P   S +  + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675

Query: 555  AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVWXPPIP 698
                +    PT  S   TS + +P   S +  + +    +  + P  P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1723


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 390 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 566
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 495 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 671
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 YSNLVALRYLKLLVQPQPRLL*WFLL 357
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,027
Number of Sequences: 37544
Number of extensions: 271734
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)