Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f18
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   3.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    24   4.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.3  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    24   5.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   9.3  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 84  LLSSVYSIPFAVILHISNTFFF 19
           L SS    PF V++H S  FF+
Sbjct: 359 LTSSKTETPFVVLVHTSGQFFY 380


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 79  QQSCMX--IKAHADFLIPLCI*PQHVDIKTLILVIFSVHDYSF 201
           ++SC+   +KA A F +PL +  +  D+K++  +   + DY F
Sbjct: 607 EKSCLNGIMKAIAKFYVPLPLSYEESDVKSIRSLESCLEDYLF 649


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -3

Query: 240 KIKKLRARKHIXXKAIIMN*KYYQY*CFNIHMLRSYTKWD*KIG-MCFNXHTRLLSSVYS 64
           K + L  +KH+  + ++ N   Y   C+ IH   S  +W+          H +++   Y 
Sbjct: 737 KSQLLAEKKHLKSQLMVANLDTYSLDCYEIHEFPS--EWENDYAPFLLKEHHKVIGETYV 794

Query: 63  IPFAV 49
             F +
Sbjct: 795 SSFDI 799


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 69  YSIPFAVILHISNT 28
           Y IPF +I HI NT
Sbjct: 63  YEIPFLLIKHIENT 76


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 72  VYSIPFAVILHISNTFFFFFLTL 4
           V S+PFA +  I   F  +F+TL
Sbjct: 157 VGSLPFAPLSDIYGRFIIYFVTL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,923
Number of Sequences: 5004
Number of extensions: 14919
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)