Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f18
         (293 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010100-1|AAQ22569.1|  222|Drosophila melanogaster GH16843p pro...    28   1.8  
AE014296-538|AAN12226.1|  222|Drosophila melanogaster CG32485-PA...    28   1.8  
K02320-1|AAA28735.1|  353|Drosophila melanogaster protein ( D. m...    26   9.4  
K02315-1|AAA28733.1|  373|Drosophila melanogaster protein ( D. m...    26   9.4  
BT029277-1|ABK30914.1|  373|Drosophila melanogaster IP09935p pro...    26   9.4  
BT023714-1|AAY85114.1|  373|Drosophila melanogaster GH24720p pro...    26   9.4  
BT010221-1|AAQ23539.1|  373|Drosophila melanogaster RH01460p pro...    26   9.4  
AE014297-2724|AAF55712.1|  373|Drosophila melanogaster CG4550-PA...    26   9.4  

>BT010100-1|AAQ22569.1|  222|Drosophila melanogaster GH16843p
           protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 29  VFDM*RITANGMEYTELNNLVWXL-KHMP 112
           VFD+   + + M+Y  + NL+W L KH P
Sbjct: 138 VFDLAEFSTSCMDYQLVQNLIWLLGKHFP 166


>AE014296-538|AAN12226.1|  222|Drosophila melanogaster CG32485-PA
           protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 29  VFDM*RITANGMEYTELNNLVWXL-KHMP 112
           VFD+   + + M+Y  + NL+W L KH P
Sbjct: 138 VFDLAEFSTSCMDYQLVQNLIWLLGKHFP 166


>K02320-1|AAA28735.1|  353|Drosophila melanogaster protein ( D.
           melanogaster opsingene, exon 5. ).
          Length = 353

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 177 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 215


>K02315-1|AAA28733.1|  373|Drosophila melanogaster protein ( D.
           melanogaster opsin(ninaE) gene, complete cds. ).
          Length = 373

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 197 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 235


>BT029277-1|ABK30914.1|  373|Drosophila melanogaster IP09935p
           protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 197 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 235


>BT023714-1|AAY85114.1|  373|Drosophila melanogaster GH24720p
           protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 197 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 235


>BT010221-1|AAQ23539.1|  373|Drosophila melanogaster RH01460p
           protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 197 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 235


>AE014297-2724|AAF55712.1|  373|Drosophila melanogaster CG4550-PA
           protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 47  ITANGMEYTELNNLVWXLKHMPIF*SHFVYDLNMWILKH*YW 172
           +T+ G++Y E +   W  +   IF S FVY + ++++ + YW
Sbjct: 197 LTSCGIDYLERD---WNPRSYLIFYSIFVYYIPLFLICYSYW 235


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,690
Number of Sequences: 53049
Number of extensions: 140422
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 506778984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)