Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f15
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   0.77 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   0.77 
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   1.3  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   1.8  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   1.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    24   2.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    24   3.1  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    23   4.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    23   5.4  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    23   5.4  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    23   5.4  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    23   5.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   7.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    22   9.5  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    22   9.5  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    22   9.5  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 125 VDTSEMVMMKDDLTYLDLGHAGQEDLQRRHDD 30
           +D +E V   D  TY D+ HA  EDL +  DD
Sbjct: 365 LDWNENVKKND--TYYDILHAILEDLSKHQDD 394


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 125 VDTSEMVMMKDDLTYLDLGHAGQEDLQRRHDD 30
           +D +E V   D  TY D+ HA  EDL +  DD
Sbjct: 365 LDWNENVKKND--TYYDILHAILEDLSKHQDD 394


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 149 GMSNTSKTVDTSEMVMMKDDLTYLDLGHAGQEDLQRRHD 33
           GM N         M+ ++D+ ++LDL     E L RR+D
Sbjct: 111 GMGNALGVNYPKAMIEVRDNQSFLDLSIRQIEYLNRRYD 149


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 155 DLGMSNTSKTVDTSEMVMM-KDDLTYLDLGHAGQEDLQRRHDDEQHDELI 9
           D GM NT    D S +V   +D  TY +      E L  R DD     LI
Sbjct: 75  DTGM-NTEYNDDNSSLVNTPRDSTTYAETNSPNTEKLAGRDDDRSLLNLI 123


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 111 LRGVHGLAGVRHAEVFSVDHYVSELHVVSEEAR-HV 215
           LR  HG+   R  +   V+H V + H++  E + HV
Sbjct: 133 LRRTHGILTSRVWDHHGVEHLVLQFHLIGNERKGHV 168


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 215 DMASFFTNNMKFADVMIYRKDL-GMSNTSKTVDTSEMVMMKDDLTYLDLGHAGQ 57
           D   +FTN+ +FAD++I +       NTS      ++ +  +  + L++   GQ
Sbjct: 45  DRTGYFTNSTRFADLIIEKATFTEFGNTSSFPKFLKLDISYETSSDLEVKRKGQ 98


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 135 GVRHAEVFSVDHYVSELHVVSE 200
           G+RH E++  D  V EL +V E
Sbjct: 247 GIRHKEMYFEDGTVPELSLVKE 268


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 146 MSNTSKTVDTSEMVMMKDDLTYLDLGHAG 60
           MS    TV T E    +DD   LDLG  G
Sbjct: 1   MSEEKPTVRTEEDDRYEDDAGDLDLGQIG 29


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 159  KRPRHVEHQQDRGHL 115
            K+P +VE  +D+GH+
Sbjct: 1900 KKPGYVEKNKDKGHM 1914


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 27  LIIMTSL*VLLTSMSEIQVGEIVLHHDHLRGVHGL 131
           +I++T+   ++     I + E +L HD   GV+G+
Sbjct: 131 MIVLTAARGIIDFSDYIGIAEQLLQHDVFLGVYGV 165


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 6   GDQFIMLLIIMTSL*VLLTSMSEIQVGEIVLHHDHLR 116
           GD  ++L+ + T     LTS++E+QV E  L+ D ++
Sbjct: 149 GDLSVILVKVYT-----LTSLNEVQVREFELNKDGVK 180


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 212 MASFFTNNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKDDLT 84
           MAS  T+  ++AD +    D+G S+ S  V+T  +     D+T
Sbjct: 148 MASTSTSKSRYADSLSTLHDMGFSDDS--VNTHALEETNGDVT 188


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 56  EDLQRRHDDEQH 21
           ED Q RH+DE+H
Sbjct: 916 EDPQSRHNDERH 927


>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 980

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 185  KFADVMIYRKDLGM-SNTSKTVDTSEMVMMKDDLTYLDLG 69
            +F  VM+      M  +T  TVD  ++V   D+L Y   G
Sbjct: 884  EFGKVMLVAVGAMMVGSTVLTVDEGKIVQRSDELGYFKFG 923


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 72  EIQVGEIVLHHDHL 113
           E+ VGEIV + DHL
Sbjct: 155 EMNVGEIVCNADHL 168


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 126 RGHLGDGHDEGRSHLPG 76
           RGH G G   GR   PG
Sbjct: 31  RGHKGSGQRRGRRIKPG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,202
Number of Sequences: 5004
Number of extensions: 9202
Number of successful extensions: 40
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)