Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f15
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0895 + 7506460-7507929                                           29   0.51 
01_06_0312 + 28396860-28397951                                         26   3.6  
04_03_0241 - 13243938-13244453,13244538-13246334                       25   6.2  
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    25   6.2  
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    25   8.2  
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503...    25   8.2  
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869...    25   8.2  

>07_01_0895 + 7506460-7507929
          Length = 489

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 165 LQKRPRHVEHQQDRGHLGDGH---DEGRSHLPGSRTCWSRGLTKTS 37
           LQ R   + H + RGH   GH   D+ ++ LP  R   SRG   +S
Sbjct: 30  LQPRRTPISHLRRRGHDATGHDATDDDKAVLPLRRLIGSRGYASSS 75


>01_06_0312 + 28396860-28397951
          Length = 363

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 162 QKRPRHVEHQQDRGHLGDG 106
           QKRPR V  + +R  +GDG
Sbjct: 18  QKRPRRVSVRMERSRVGDG 36


>04_03_0241 - 13243938-13244453,13244538-13246334
          Length = 770

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 153 PRHVEHQQDRGHLGDGHDEGRSH--LPGSRTCWSRGLTK 43
           P   ++Q+ R H GD  ++GR    L   R  W  G  K
Sbjct: 371 PSFFDNQRRRDHDGDDDNDGRGRRDLARGRESWKHGEAK 409


>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  LHHDHLRGVHGLAGVRHAEVF 158
           LH DH RG+    G RH  ++
Sbjct: 23  LHQDHTRGLGAAGGWRHGPLY 43


>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 VRHAEVFSVDHYVSELHVVSEEARHVN 218
           ++  + F+V++YV E   +S   RH N
Sbjct: 204 IKSGQAFAVENYVKEFATISLAIRHRN 230


>04_04_1541 +
           34249778-34249882,34249964-34250115,34250225-34250350,
           34251868-34252030,34252601-34252678,34252749-34252847,
           34253045-34253188,34253344-34253446,34255303-34255646,
           34255727-34255891
          Length = 492

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 QKRPRHVEHQQDRGHLGDGHDEGRSHLPGSRTC 64
           QKRPR V+ +   G  G G+ +  S L  S TC
Sbjct: 308 QKRPRKVDQETSIGKQGSGYVQCISRLTKS-TC 339


>03_02_0903 +
           12285874-12285918,12286715-12286820,12286906-12286961,
           12287062-12287113,12287182-12287282,12287891-12288287,
           12288852-12288937,12289061-12289078
          Length = 286

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 162 QKRPRHVEHQQDRGHLGDGHD 100
           +K+ +HVEH       GDG D
Sbjct: 64  KKKKKHVEHDTSLTEAGDGED 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,416,002
Number of Sequences: 37544
Number of extensions: 68570
Number of successful extensions: 332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)