Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f14
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 2.1
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 2.1
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 2.8
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.6
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 4.8
01_06_0125 + 26711157-26713297,26715026-26715206 28 6.4
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 8.4
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 8.4
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 8.4
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 587 LKGSGSW*EQYQRTVGTIDSRWV 655
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 587 LKGSGSW*EQYQRTVGTIDSRWV 655
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 125 RRQGHPSQYCRSRGHQPGPNRR 190
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 247 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 366
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -2
Query: 705 PVXIGEHSQPGPN*SIPTHLESMVPTVRWYCSHQLPLPFNCYLFPWRIXRSCI 547
P I EH GP P H + + C LP P NC RI +C+
Sbjct: 280 PDQIYEHDMRGPE---PAHSPNTPDQIYVPCERMLPYPSNCDNAEDRIHMACL 329
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 42 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 194
++ GE GVD I ++ S D + +E GRG + ++ D G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 333 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 235
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 276 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 416
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 450 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 340
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,209,183
Number of Sequences: 37544
Number of extensions: 524652
Number of successful extensions: 1383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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