Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f14
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 40 0.001
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 40 0.002
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.81
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 1.1
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 1.9
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 2.5
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 2.5
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 4.3
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 40.3 bits (90), Expect = 0.001
Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 8/209 (3%)
Frame = -3
Query: 626 CAGIVLTNYHYLSTATCFHGEXYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEE 453
C +L H ++ A CF + +Y ++ G +I Y+ +P + ++
Sbjct: 54 CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112
Query: 452 NYDKDVSIVRVTH-AIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSVSDGNLH 276
+ D++I+ + + I F + GWG+ G L
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQ 169
Query: 275 KLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN-----AL 111
+ + N+ +C + + + + + FCAG + GG D D G P + L
Sbjct: 170 AALIPIINRFDCVNSSQIYSSM-SRSAFCAGYLE-GGIDSCQGDSGGPFACRREDGAFVL 227
Query: 110 VGIVSFGKSNANDIYPVVLTSISSFTEWI 24
G++S+G A P + T ++ + WI
Sbjct: 228 AGVISWGDGCAQKKQPGIYTMVAPYLSWI 256
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 39.9 bits (89), Expect = 0.002
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 7/209 (3%)
Frame = -3
Query: 629 QCAGIVLTNYHYLSTATCFHGEXYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEFS--- 459
+C G ++ L+ A CF + +Y + G RS G V HP ++
Sbjct: 83 RCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG--HRSGSGSPHRVTAVSIHPWYNIGF 140
Query: 458 EENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSVSDGNL 279
+YD +I+R+ ++ + GWG+T++G S+S L
Sbjct: 141 PSSYD--FAIMRIHPPVNTSTTARPICLPSLPAVENRLCV--VTGWGSTIEGSSLSAPTL 196
Query: 278 HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----AL 111
++ + + + C R+ + CAG G D D G P L
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLMCARDGHWEL 255
Query: 110 VGIVSFGKSNANDIYPVVLTSISSFTEWI 24
G+VS+G A P V ++ S + WI
Sbjct: 256 TGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 438 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 337
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 414 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 283
C P+RPK P G P CR PG R G NY + ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 438 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 343
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 661 YSYPS*INGSNSALVLFSPTTTTFQLL 581
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 131 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 235
+GH RGH P P R R Y + HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 131 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 235
+GH RGH P P R R Y + HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = -1
Query: 658 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENXTILHTVAL-SLDLPVAVSPVKYLMFTL 482
S PS S++ + TTT ++P + TI T + S+ V+ T+
Sbjct: 220 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 278
Query: 481 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 359
+ T+P + T+ AS PSTS T++ +N S
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = -1
Query: 658 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENXTILHTVAL-SLDLPVAVSPVKYLMFTL 482
S PS S++ + TTT ++P + TI T + S+ V+ T+
Sbjct: 202 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 260
Query: 481 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 359
+ T+P + T+ AS PSTS T++ +N S
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,843
Number of Sequences: 27780
Number of extensions: 429245
Number of successful extensions: 1157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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