Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f12
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 36 0.035
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 34 0.11
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 34 0.11
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 29 2.3
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 29 4.0
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 5.3
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 28 7.0
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 28 7.0
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 7.0
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 27 9.3
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 534
SGT+FD+FLITDDP AK E K ++ EK
Sbjct: 334 SGTLFDNFLITDDPELAKTFAEETWGKHKDAEK 366
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 534
SGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 40 SGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 534
SGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 341 SGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 373
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 266 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDVRVDGDYA 150
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 153 VIPIYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSIG 287
++ +T++S K RT L TC Y N +LKTN + G
Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTNFANYG 96
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 339 RTLRTPRYLMSWHSLINHNSLQLIVFLH 422
R L T +L++W + + H+SL + FLH
Sbjct: 119 RLLPTASHLLAWRTALAHSSLAVCRFLH 146
>08_01_0535 -
4638954-4639127,4639894-4639944,4640287-4640352,
4640492-4640557,4640701-4640892,4641282-4641780,
4642009-4642364
Length = 467
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 137 YINSERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 256
Y++S RN H H + +T L N S G + +H H
Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKK 531
+G++FD+ LI DDP A+ EV +E EK+
Sbjct: 332 AGSVFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 195 HIYLHTTCPYESVKFEPNTRTVL 263
H +H T PY+++ F+P RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERGE 564
+G++FD+ LI DDP A++ E
Sbjct: 332 AGSVFDNILICDDPEYARKAAE 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,879
Number of Sequences: 37544
Number of extensions: 253195
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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