Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f12
(629 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 35 0.27
M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein. 34 0.48
M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro ribonu... 34 0.48
CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein. 34 0.48
BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein. 34 0.48
BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein. 34 0.48
BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein. 34 0.48
BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein. 34 0.48
AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein. 34 0.48
AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor ... 34 0.48
AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein. 34 0.48
BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein. 31 2.5
AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens ... 31 2.5
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 30 7.8
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 34.7 bits (76), Expect = 0.27
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +2
Query: 8 LYNNNHNHTKH*GYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 175
L+ + H HT + I Y + H H + H ++T + H H H
Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115
Query: 176 QYETTDTYLLTHNMSLRIGKIRAKHTHS 259
+ + T L TH +SL HTH+
Sbjct: 116 THTLSCTSLYTHTLSLHWLTCLYTHTHA 143
>M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro
ribonucleoprotein autoantigen (Ro/SS-A), complete cds.
).
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor
variant protein.
Length = 406
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 312 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 346
>AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.48
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 528
SGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 323 SGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 531
SGTIFD+FLITDD A G+ +G ++
Sbjct: 309 SGTIFDNFLITDDEEYADNFGKATWGETKGPER 341
>AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens
cDNA FLJ25355 fis, clone TST01593. ).
Length = 384
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 629 SGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 531
SGTIFD+FLITDD A G+ +G ++
Sbjct: 309 SGTIFDNFLITDDEEYADNFGKATWGETKGPER 341
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 23 HNHTKH*GYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYETTDTYL 202
H H H Y + + Y H H + H +IN+ + H+H H + T T+
Sbjct: 254 HIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTHT 309
Query: 203 LTH 211
TH
Sbjct: 310 YTH 312
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,707,316
Number of Sequences: 237096
Number of extensions: 1417450
Number of successful extensions: 2504
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2499
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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