Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f12
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   2.7  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   2.7  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 86  HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 256
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 86  HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 256
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 626 GTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 531
           G   D+    D+ A  KER E++KKR+E  K+
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKR 685


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,477
Number of Sequences: 27780
Number of extensions: 245027
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)