Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f11
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               20   3.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   7.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   7.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    18   9.5  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 84  IFLIWHFNMILFEQMLFLY 140
           +F  +HF  IL   ++FLY
Sbjct: 1   MFKNYHFFFILVITLIFLY 19


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  FFLYGILI*FCLNKCC 132
           FFL  +++ FC + CC
Sbjct: 343 FFLMYVIVPFCPD-CC 357


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  FFLYGILI*FCLNKCC 132
           FFL  +++ FC + CC
Sbjct: 343 FFLMYVIVPFCPD-CC 357


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  FFLYGILI*FCLNKCC 132
           FFL  +++ FC + CC
Sbjct: 343 FFLMYVIVPFCPD-CC 357


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 146 VSVQKQHLFKQNHIKMPY 93
           VSV++ HLF    +   Y
Sbjct: 364 VSVEQPHLFLYPEVSSTY 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,112
Number of Sequences: 438
Number of extensions: 375
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)