Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f06
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   4.9  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   6.4  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.4  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.4  

>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 464 LEILDLTGKGPLMAIQAKIGIVTKIGDQMALLLHGIKGTKEEVNKVGTEVEEVE 303
           LE+LD  G   ++ I    GI T+IG+    ++ G+      +  V  E +E+E
Sbjct: 40  LELLDAEGPSFILDIGCGSGISTQIGESQGHVVVGM-DISPSMLSVALESQEIE 92


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 324  SNLVDFLLGSLDSMKEEGHLIPNFGYYSNFC 416
            +N + F +G  D   E G + P FGYY   C
Sbjct: 1114 TNNLTFGIGGKDP--ETGEVKPGFGYYETIC 1142


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 107 DIFSTLEPKFITNQHIHLCLQLYSSS 184
           DI+ST +P+   ++ I  CL L++ S
Sbjct: 428 DIYSTEQPQQAFHERIQFCLALHNDS 453


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 294 CHFFHLLHLRSNLVDFLLGSLDS 362
           C+FFH+ ++R+N+ + +L  + S
Sbjct: 425 CNFFHMWNMRANIPENMLDYIQS 447


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 336 DFLLGSLDSMKEEGHLIPNFGYYSNFCLNCHERALAS 446
           DF     + +KE       FG + +FCLNC   A AS
Sbjct: 845 DFSQKPQNYVKEVNLQKSRFGLWFSFCLNCGHGAHAS 881


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,452
Number of Sequences: 5004
Number of extensions: 32887
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)