Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f06
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135...    30   1.2  
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    30   1.6  
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977     29   3.7  
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...    28   5.0  
03_05_0391 - 23740603-23740665,23740805-23740927,23741009-237411...    28   5.0  
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573...    28   5.0  

>03_06_0699 -
           35612919-35612989,35613079-35613319,35613506-35613568,
           35613644-35613709,35614110-35614193,35614685-35614890,
           35614977-35615067,35615176-35615280,35615552-35615626,
           35615728-35615820,35615914-35615989,35616115-35616305
          Length = 453

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 494 KQGGVDF*EVLEILDLTGKGPLMAIQAKIGIVTKI------GDQMALLLHGIK 354
           +QG +   E +EIL LT  GPL      + +  KI      GD + LLL G+K
Sbjct: 290 EQGTIKTGEDVEILGLTPSGPLKTTVTGVEMFKKILDHGEAGDNVGLLLRGLK 342


>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
            29309566-29310123,29310199-29310258,29310839-29310904,
            29310993-29311103,29311167-29311257,29311349-29311449,
            29311534-29311641,29311737-29314205
          Length = 1289

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 392  IGDQMALLLHGIKGTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQG 219
            I D + LL+   + T EE     T V+EV+   + +KV+ G      +++V G+L +G
Sbjct: 897  IPDLLLLLVQWAQKTMEERL---TFVDEVQCTVLEVKVVEGHGTTVDVVLVNGILHEG 951


>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
          Length = 359

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 519 SLVAAALNQAGWSGFLGGPGNTGPNWQG 436
           + VAA+L + GW G  GG G  G  W G
Sbjct: 138 AFVAASLGKGGWRG--GGGGGGGRRWWG 163


>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 186 LMFVAYCCSIHSLTQNSHYHYYSSFL-GLTS 275
           L+F+ +C SI+SL    H  +YS  L  LTS
Sbjct: 440 LLFLVFCFSIYSLKYEKHKSWYSWILSSLTS 470


>03_05_0391 -
           23740603-23740665,23740805-23740927,23741009-23741148,
           23741209-23741264,23742005-23742262,23743290-23743627
          Length = 325

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 347 KEEVNKVGTEVEEVEKMAIGIKVL 276
           K EVNKV   +EEVE   I +KVL
Sbjct: 232 KTEVNKVMVHIEEVEVNQISMKVL 255


>01_06_0030 +
           25756294-25756575,25756977-25757101,25757276-25757313,
           25757501-25757611,25757703-25757782,25758264-25758318,
           25758465-25758851,25759080-25759223,25759630-25759671,
           25759755-25759837
          Length = 448

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 219 SLTQNSHYHYYSSFLGLTSQYFDSNCHFFHLLHLRSNLVDFLLGSLDSMKEEGHLIPNF 395
           SL   SH  +      + S +F    HF +LL L+   V+ +L +L+  KE G ++  F
Sbjct: 361 SLWGTSHLSFSLFSFSIYSLWFKGFYHFLYLLVLQ---VEMILQALEYEKEHGKVLDEF 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,870
Number of Sequences: 37544
Number of extensions: 209875
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)