Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12f06
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical...    31   0.84 
U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched fami...    28   4.5  
U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical...    27   7.8  

>AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical
           protein Y111B2A.5a protein.
          Length = 434

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -1

Query: 401 VTKIGDQMALLLHGIKGTKEEVNKVGTEVEEVEKMAIGIKVLAGQ 267
           V ++ DQ+   +  +K  KEE +K+  ++E+ EK  I ++VL  Q
Sbjct: 302 VKEMEDQLEAKVKALKEAKEESSKLEKKLEKAEKERIALEVLEEQ 346


>U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical
           protein ZK177.8b protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 353 GTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQGMDGTT 204
           G  E V KVG +++E+ +     + + G+ ++    ++  VLG+G+D  T
Sbjct: 398 GAAEVVKKVGQKMKEILEQMDDTEEMDGKLKDIQFTVMHSVLGRGLDDKT 447


>U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical
           protein ZK177.8a protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 353 GTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQGMDGTT 204
           G  E V KVG +++E+ +     + + G+ ++    ++  VLG+G+D  T
Sbjct: 432 GAAEVVKKVGQKMKEILEQMDDTEEMDGKLKDIQFTVMHSVLGRGLDDKT 481


>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 195 VAYCCSIHSLTQNSHYHYYSSFLGLTSQYFDSNCHFFHLLHLRSNLVDFLLGSLDSMKE- 371
           V Y C   S T  SH  +  SFLG T + F  N   F  + L S L  FL   L    E 
Sbjct: 235 VVYTCRFFSPTATSHSSHSLSFLG-TCRVFWLNFTVFLSVSLLS-LSIFLSYDLSKRLEM 292

Query: 372 EGHLIPNFGYYSNF 413
           +  L+ N G++  F
Sbjct: 293 KRELLGNLGFFPTF 306


>U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched family
           protein 2 protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 276 QYFDSNCHFFHLLHLRS-NLVDFLLGSLDSMKEEGHLIP 389
           +YFD+N H F+    RS  LV   +  +D++KE   L P
Sbjct: 572 EYFDNNVHHFNFQWQRSARLVKNFVFGVDAIKETSTLSP 610


>U41018-2|AAA82325.2|  260|Caenorhabditis elegans Hypothetical
           protein ZK816.4 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 219 SLTQNSHYHYYSSFLGLTSQYFDSNCHFFHL 311
           ++++NSHY  +  F+  T  YF   C  F L
Sbjct: 79  AISENSHYLGWEGFIFRTKAYFSEVCDNFFL 109


>AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical
           protein Y38H6C.21 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = +3

Query: 177 QAHLMFVAYCCSIHSLT---QNSHYHYYSSFLGLTSQYFDSNCHFFH--LLHLRSNLVDF 341
           Q  ++   Y C + ++T    + ++H Y  F  L S YF S  H  +  +    + LV  
Sbjct: 151 QETILLEIYNCILFAMTIITGSFYFHIYKLFRRLPSTYFSSKIHLLYQFVPIYIAQLVYL 210

Query: 342 LLGSLDSMKEEGHLIPNF 395
               LD + E  H+  +F
Sbjct: 211 FADFLDFITENMHISISF 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,520
Number of Sequences: 27780
Number of extensions: 186301
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)