Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12f05
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 95 6e-20
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 78 5e-15
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 78 7e-15
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 75 4e-14
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 36 0.028
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 30 1.4
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 1.4
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 29 2.4
03_05_1132 - 30609569-30609721,30610113-30610204,30610302-306104... 29 2.4
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 28 5.6
01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659 28 5.6
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 28 7.5
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 7.5
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 27 9.9
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 27 9.9
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 27 9.9
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 94.7 bits (225), Expect = 6e-20
Identities = 48/147 (32%), Positives = 81/147 (55%)
Frame = -2
Query: 562 VEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEH 383
V+V P L + G +FT+S G ++ C + +S GS + ++LD ++G
Sbjct: 74 VKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACFWIDSAE--KGSGISINLDWKIGIA 131
Query: 382 AVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSL 203
A D+ +A+KEK+ ++L +R+L V I + Y + RE R SE TN RV W+S+
Sbjct: 132 AKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSI 191
Query: 202 LQTGVLVIIGYWQMRHLKSFFEAKKLV 122
L V +++ Q+ HL+ +F+ KKL+
Sbjct: 192 LSLSVCIVVSILQLWHLQGYFQKKKLI 218
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 78.2 bits (184), Expect = 5e-15
Identities = 45/150 (30%), Positives = 77/150 (51%)
Frame = -2
Query: 571 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 392
G +V P I+ + G SFT++ G ++ C ++ + ++++LD +V
Sbjct: 115 GTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRN--KRLVVKLNLDWRV 172
Query: 391 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 212
G D+ +VA+KEKL ++L + +L V I + R +E R TSE TN R W
Sbjct: 173 GIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATW 232
Query: 211 WSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 122
S++ V +I+ Q+ HL+ +F KKL+
Sbjct: 233 LSIISLIVCIIVSVLQLWHLQQYFRKKKLI 262
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/128 (28%), Positives = 72/128 (56%)
Frame = -2
Query: 505 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 326
G +FT++ G+++ C ++ + D + G A D++NVA+K ++ +++
Sbjct: 105 GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEME 162
Query: 325 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKS 146
+++L + + I +E Y R+REE + ++ TN R+ W L G+ + + Q+ HLK+
Sbjct: 163 LKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGICLSVAGLQLWHLKT 222
Query: 145 FFEAKKLV 122
FFE KKL+
Sbjct: 223 FFERKKLL 230
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/128 (28%), Positives = 70/128 (54%)
Frame = -2
Query: 505 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 326
G +FT+S G+++ C ++ + + D + G A D+ NVA+K ++ +++
Sbjct: 107 GNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWRSGVSARDWTNVAKKGQVDMMEVE 164
Query: 325 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKS 146
+++L D ++ I +E Y R REE ++ + TN R+ W + + + Q+ HLK+
Sbjct: 165 LKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLAICLSVAGLQLWHLKN 224
Query: 145 FFEAKKLV 122
FFE KKL+
Sbjct: 225 FFERKKLL 232
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 35.9 bits (79), Expect = 0.028
Identities = 33/147 (22%), Positives = 62/147 (42%)
Frame = -2
Query: 571 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 392
G+ + VRDPN + + F G H C ++N + + V D+ V
Sbjct: 65 GVDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFC-FTNKSPYHE----TVDFDVLV 119
Query: 391 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLW 212
H Y A+ E + L +I +L + ++ I EQ + + +R +E+ ++R +
Sbjct: 120 -SHFSYYDQHAKDEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVH 178
Query: 211 WSLLQTGVLVIIGYWQMRHLKSFFEAK 131
+ ++ L+ Q+ L FE K
Sbjct: 179 KAFFESAALIAASVVQVYLLHRLFERK 205
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = -2
Query: 421 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 242
QL L Q GE D ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGE---DLSSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRRMV 158
Query: 241 SES 233
S
Sbjct: 159 HYS 161
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 303 YTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLSSSVT 169
YTRS+ S L R + D + + + SGG C V L++ T
Sbjct: 159 YTRSRVSSLRRSRSSLNTDTRKAQDSGKLSGGTCLASVDLAADGT 203
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 304 VHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 185
+H+ ++Q Q+Q+++RF + N VLW S++ TGVL
Sbjct: 258 LHEQQQQQQQQQQQQQRFLIAVQ--NVLVLWDSVILTGVL 295
>03_05_1132 -
30609569-30609721,30610113-30610204,30610302-30610428,
30610534-30610705,30610958-30611007,30611093-30611243,
30611353-30611479,30611885-30612071,30612245-30612398,
30612485-30612567,30613439-30613573
Length = 476
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 324 LDSCWIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLSSSV 172
+++C TR +++L+ GKE K+ +S C G +CY + +L S +
Sbjct: 153 IEACSEFVTRYHQNQLSSGKEAG---KNLPMLSSACPGWICYAEKTLGSFI 200
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = -2
Query: 400 IQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQR 221
+ GEH + +N A ++ +E + +QL ++ + ++AY + E ++ E ++R
Sbjct: 66 VLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQEDEDKR 125
Query: 220 VL 215
++
Sbjct: 126 MI 127
>01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659
Length = 186
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 225 WFVLSDVCRKRSSLCLW*A-CSFVIWCT 305
WF + ++C K +CL+ A C +W T
Sbjct: 155 WFSVPEICEKHQVICLYCASCMLDVWYT 182
>11_03_0177 + 11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -2
Query: 457 MYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKE--KLTELQLRIRQLLDQVHQITKE 284
MYS + S + L VH D V EH + +V + + + L+ R+ LL + +K
Sbjct: 973 MYSFTNLAESINMLNVHDDNAVFEHKMRCISVLEADGFDVRHLRSRLETLLSLKNSWSKI 1032
Query: 283 QAYQRQREERFRQTSESTNQRVLWWSLL 200
Q ++ E++ Q QR S+L
Sbjct: 1033 QDMMKRSEKKIAQEEIDDQQRCAEISVL 1060
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 447 LEYMHITCSPGVLDVN 494
LEYMH TCSP ++ N
Sbjct: 564 LEYMHETCSPSIIHKN 579
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 344 DRTSTQD*TVAGSSTPDHKGAGLPEAKRRAFSTNIRKHK 228
+ ST+ S+ PD + LPE K+ ++S +++K K
Sbjct: 290 EENSTRSAKHTASADPDQIHSRLPEHKQNSYSASVKKDK 328
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 415 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 236
R LD++ E D +KE+ E + +R L D+ + +E+ +R RE + E
Sbjct: 304 RRELDLRDEERRRDLLLEREKERDRERERELRDLRDRERERERERDRERLRERERERELE 363
Query: 235 STNQRV 218
+R+
Sbjct: 364 RERERL 369
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 IQQLSNPELKFGQFFLLCNICIVYSMLTNLNVKMNS 415
I L P + FFLL CIVY M T++++ NS
Sbjct: 432 ISLLREPMMLITGFFLLFMACIVY-MRTDMSISKNS 466
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,574
Number of Sequences: 37544
Number of extensions: 292198
Number of successful extensions: 873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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