Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e24
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    29   0.57 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   4.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   7.0  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.3  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   9.3  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
 Frame = -1

Query: 387 RDWRTFHRY--VYHFIFLDNGDCMAIGSVSQPAILSHLTIGY--YCRKSDQAVFPVEWCD 220
           R+ RT H++  + H+IF  N     +G  +   + +  T+G   +C K    +   E  +
Sbjct: 65  RNTRT-HKFKQLLHYIFFSNRSSSVLGKQN---VHNSQTLGSVSFCEKHAIDINYSENVN 120

Query: 219 FQLY--QHGEMQTLPKDYGFMFKAGGDIYTVKVQVDDEDVFYIG 94
            QL    H + QT  K + F  ++G D Y++K   D +   Y G
Sbjct: 121 KQLNFESHLDDQTCSKRFYFNEQSGSDRYSLKCDSDTDSSTYFG 164


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 334  VIKKYKMVDVSMERAPVAKWSKAMISNCGHIQFVLF-----TVNFYNPCNYAHLFVMCLM 498
            +++K   V +S  R    K +K ++SNC H+ F        TV    P N   L ++ L+
Sbjct: 1450 LLEKQNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINTEKLLMVSLV 1509

Query: 499  Q 501
            +
Sbjct: 1510 E 1510


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 410 EIIALDHFATGARSIDTSTILYFLITATVWP 318
           E+   +HF T +RS+ T  I   ++++  WP
Sbjct: 39  EVQDSEHFTTASRSVKTGLISSAVVSSWTWP 69


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 522  NPATTIPSPCR*PYCMAPYVSHN*NEA--IVHSMLEIVQQLGNLQDSFFV 665
            NP   +P P R     +PYV+ N   A    H M  ++ + GN Q S ++
Sbjct: 966  NPGFDVPLPLRASSLGSPYVTRNEESASESSHVMFTLLTKRGNKQRSQYL 1015


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 564 SMATDMARESWSQDYFKLLKKLHQTHYEQMGVITGIVKVDGKQYE 430
           S+   +  + W +D   L   +H  HY    +   I +VDG +YE
Sbjct: 514 SLGQPLTCQGWQRDSMSLFG-MHYHHYGAQRIWYVIPEVDGPKYE 557


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 585 DSHMAPYSMATDMARESWSQDYFKLLKKL 499
           DS  +PYS A DMA ES   ++F + +K+
Sbjct: 458 DSFSSPYSPAEDMAEES---EFFGMKEKI 483


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
 Frame = -1

Query: 168 FMFKAGGDIYTVKVQVDDEDVFYI---------GKERTSKFYERWSTVDINGVKGRACVE 16
           F  + GG I    +   DE+ +YI          +    K  E W  V++  V+GRA + 
Sbjct: 109 FTNETGGIIDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENWKGVELERVQGRALIA 168

Query: 15  WQ 10
            Q
Sbjct: 169 IQ 170


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 441 KQYELNMPAVRDHSFGPFRDWRTFHRYVY 355
           KQ++ +   + D   GPF D R+F++ VY
Sbjct: 213 KQFKYDKMPIPDWIKGPFVDIRSFYKDVY 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,967
Number of Sequences: 5004
Number of extensions: 69224
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)