Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e24
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1005 - 13136999-13137467,13137871-13138050,13138422-131385...    30   2.4  
09_04_0653 + 19242063-19242780,19244170-19244324,19245420-192456...    29   3.2  
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    29   4.2  
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47...    29   5.5  
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    28   7.3  
12_02_0404 - 18633355-18633783,18634215-18634232                       28   9.7  
02_05_0114 + 25958834-25961296                                         28   9.7  

>03_02_1005 -
           13136999-13137467,13137871-13138050,13138422-13138551,
           13138651-13138738,13139316-13139660
          Length = 403

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 325 TVAVIKKYKMVDVSMERAPVAKWSKAMISNCGHIQFVLFTVNFYNPCNYAHLFVMCL 495
           TVA +K +++V  S E  P  +    +I   G I   LFT+++  P +    F +CL
Sbjct: 338 TVASVKNFQLV-ASDENGPTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICL 393


>09_04_0653 +
           19242063-19242780,19244170-19244324,19245420-19245609,
           19245830-19245885
          Length = 372

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = -1

Query: 663 QKSYPEDYLTVELSLTWSAQWPHFNYDSHMAPYSMATDMARESWSQDYFKLLKKLHQTHY 484
           +K  P + L  EL   +SA WP      H+AP + ++    E   + + KL+  L + + 
Sbjct: 280 KKMIPIEKLHSELVACYSATWPQRQVQMHLAPEAGSSAAGTE--CKPWLKLMYLLRK-YP 336

Query: 483 EQMGVITGIVKVDGKQY 433
           E+  V+      +G+Q+
Sbjct: 337 ERFTVMNSSCDEEGRQH 353


>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 645 DYLTVE-LSLTWSAQWPHFNYDSHMAPYSMATDMARESWSQDYFK 514
           D +T+E   + W A    +N +S+  P+      +RE W++ YFK
Sbjct: 333 DMMTIEEFEMAWKALISKYNLESN--PFLTRAYESREMWAKPYFK 375


>06_01_0056 -
           478424-478491,478587-478821,478916-478978,479102-479179,
           479263-479354,479788-479866,479971-480104,480184-480523
          Length = 362

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 558 ATDMARESWSQDYFKLLKKLHQTHYEQMGVITGIVKVDGKQYELNMPAVRDHSFGPFRDW 379
           A D   E+W    F    ++     + +GVI   V  +GK ++L + ++   + G F D 
Sbjct: 98  ADDAPGETWHM-VFSTEGEIPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDS 156

Query: 378 RTFHRYVYHFIFL-DNGD 328
           +T    V   ++  D G+
Sbjct: 157 KTVSLCVKRLVYTNDQGE 174


>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 266 IAVSQIKLSSLLNGVTSSCTNTEKCRLCLRITDLCSKPEVI 144
           ++V  I  + L+NG   +    E C+L +++T+L  KP+VI
Sbjct: 758 LSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVI 798


>12_02_0404 - 18633355-18633783,18634215-18634232
          Length = 148

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 256 LTAIVPNCEMRQ--NSRL*NTSYGHTVAVIKKYKMVDVSMERAPVAKWSKAMISNCGHIQ 429
           LTA V     RQ  N RL NT Y H    +K   ++  ++E  PVAK+    +    +I+
Sbjct: 36  LTASVLTNFYRQMFNERLSNTVYRHLPCSLKAGSILSRAIEGTPVAKFKTRELRMFSYIE 95


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 266 IAVSQIKLSSLLNGVTSSCTNTEKCRLCLRITDLCSKPEVI 144
           +++  I  + L+NG   +    E C+L +++T+L  KP+VI
Sbjct: 640 LSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVI 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,083
Number of Sequences: 37544
Number of extensions: 429294
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)