Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e24
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical ... 118 4e-27
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 1.2
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 30 1.6
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 28 6.6
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 28 6.6
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 8.7
>AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical
protein C05D2.8 protein.
Length = 426
Score = 118 bits (285), Expect = 4e-27
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 17/272 (6%)
Frame = -1
Query: 771 LKQTESEGGEYKV-NGIEVHNFIPMRTWKLTYNGSMKQ--------KSYPEDY------L 637
+K + E+K +G V PM+ W++ +NG + K+ E+
Sbjct: 151 VKSIQCPEKEWKTESGFIVSCIEPMKKWRIQFNGKLASAPGKINFIKNGSEEMKDGIKIF 210
Query: 636 TVELSLTWSAQWPHFNYDSHMAPYSMATDMARESWSQDYFKLLKKLHQTHYEQMGVITGI 457
LTW+ F++D +P ++A +A E WS+ F ++ HQ+HYEQ G I+G
Sbjct: 211 DANFDLTWTNFGNQFDFDKMCSPTAIAHSLAIEPWSRGLFDKMRASHQSHYEQFGTISGD 270
Query: 456 VKVDGKQYE-LNMPAVRDHSFGPFRDWRTFHRYVYHFIFLDNGDCMAIGSVSQP-AILSH 283
++ + M ++RDH+ +R W RY+ L++G C+ +S P + SH
Sbjct: 271 FRIGNHTASGIRMTSMRDHTIAGYRRWSDIRRYIMMIYHLEDGTCVHTSVISMPETVFSH 330
Query: 282 LTIGYYCRKSDQAVFPVEWCDFQLYQHGEMQTLPKDYGFMFKAGGDIYTVKVQVDDEDVF 103
L GY + + PV+ F L HGE + P D+ + F+ G I+ V + + F
Sbjct: 331 LEFGYIVTPTGETK-PVDRVHFSLPNHGEDRHFPDDFHYSFEVDGKIHHADVHIKEAVSF 389
Query: 102 YIGKERTSKFYERWSTVDINGVKGRACVEWQY 7
+G ++ + E S ++G G E +Y
Sbjct: 390 KMGLDQACQVTEGMSEFVVDGKPGWGFAEVEY 421
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = -3
Query: 721 SSQFHTNANLETDLQWIYETKKLS*RLPNC*TISNMECTMASF 593
S F TN N E DL+ E KK RLPN T S +C A F
Sbjct: 2356 SLSFSTNGNDEEDLERPIERKKT--RLPNALTPSVADCIRAVF 2396
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 242 SSLLNGVTSSCTNTEKCRLCLRITDLCSKPEVIFT-R*RSKLTTK 111
++++ ++C N + +CL IT +CS +IF+ + +S LT+K
Sbjct: 108 AAVMTMFVTACYNVQSVLICLCITTVCSGSVIIFSMKTKSDLTSK 152
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 768 KQTESEGGEYKVNGIEVHNFIPMRTWKLTYNGSMKQKSYPEDYL 637
+Q +E +Y V+ + +H F+ ++ K+ Y+ +K +S ++YL
Sbjct: 184 EQVRNENEKY-VDYVNLHEFVAIKDDKVVYSEIVKHRSTEKEYL 226
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 768 KQTESEGGEYKVNGIEVHNFIPMRTWKLTYNGSMKQKSYPEDYL 637
+Q +E +Y V+ + +H F+ ++ K+ Y+ +K +S ++YL
Sbjct: 80 EQVRNENEKY-VDYVNLHEFVAIKDDKVVYSEIVKHRSTEKEYL 122
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 106 YVFV-VNLDL-HRVN-ITSGFEHKSVILRQSLHFSVLVQLEVTPFNREDSLI*LTAIVPN 276
YVFV ++++L H ++ + F+ K +++ ++ F +Q T FN++DS I + +P
Sbjct: 125 YVFVNIHINLSHLIDCVKENFQGKRLVVVSTVQFIPSLQTLRTTFNKDDSSIRID--IPQ 182
Query: 277 CE 282
C+
Sbjct: 183 CK 184
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 768 KQTESEGGEYKVNGIEVHNFIPMRTWKLTYNGSMKQKSYPEDYL 637
+Q +E +Y V+ + +H F+ ++ K+ Y+ +K +S ++YL
Sbjct: 130 EQVRNENEKY-VDYVNLHEFVAIKDDKVVYSEIVKHRSTEKEYL 172
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 768 KQTESEGGEYKVNGIEVHNFIPMRTWKLTYNGSMKQKSYPEDYL 637
+Q +E +Y V+ + +H F+ ++ K+ Y+ +K +S ++YL
Sbjct: 184 EQVRNENEKY-VDYVNLHEFVAIKDDKVVYSEIVKHRSTEKEYL 226
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 248 KLSSLLNGVTSSCTNTEKC 192
K SSL NG+T C NT C
Sbjct: 1265 KCSSLENGITGCCCNTNAC 1283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,581
Number of Sequences: 27780
Number of extensions: 387032
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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