Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e24
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   7.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.8  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 14  HSTQARPLTPLISTVDHLS*NFDVLSFP 97
           H   ARP T L++    L   +DVL  P
Sbjct: 121 HHDNARPHTSLVTRQKLLELGWDVLPHP 148


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 14  HSTQARPLTPLISTVDHLS*NFDVLSFP 97
           H   ARP T L++    L   +DVL  P
Sbjct: 243 HHDNARPHTSLVTRQKLLELGWDVLPHP 270


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 687 LTYNGSMKQKSYPEDYLTV 631
           LTYNG++    +P  Y  V
Sbjct: 364 LTYNGTVHDVEFPGXYTMV 382


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 312 FLWPYSRRYQEI*NG 356
           ++W  S +YQ+I NG
Sbjct: 372 YIWIVSNKYQKIANG 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,521
Number of Sequences: 438
Number of extensions: 5091
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)