Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e23
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 31 0.19
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.57
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 4.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.3
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 5.3
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 7.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 7.0
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = +3
Query: 282 GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 461
GP GL + D + GH V++ + + L+ + N+++D V+ +R +L D +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 462 VLAIAVGKSAIVAVLIVQRQSETVAL 539
+ + VGK+ V++ + + + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.57
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 740 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 609
+K I + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 713 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 621
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.3
Identities = 26/96 (27%), Positives = 36/96 (37%)
Frame = -2
Query: 395 IVNTQRNQYLTLAVQTTPNHNHMAYGANSVEGFKAQWTLQPAKYDNDVLFFMYNREYNEA 216
+V+T +Q+L + P A+G NS+ KA P DN + N N
Sbjct: 813 LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV-IDNPL-----NVRINAI 866
Query: 215 LVLSRPTDTWGNRMAFGYSGRVVGSPEQYAWGIKAF 108
L R D M Y R G P+ +W F
Sbjct: 867 LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHF 902
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 778 TTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKAP 614
T+ASS P+T++ A ++ T + S T++ T +A S T TS S AP
Sbjct: 352 TSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 407
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 778 TTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKAP 614
T+ASS P+T++ A ++ T + S T++ T +A S T TS S AP
Sbjct: 466 TSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 521
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 172 AMRLPQVSVGLESTNASLYSRLYMKNKTSLSYLAGCRV 285
A+RLP + V + A + + +K K ++ ++AGCRV
Sbjct: 577 ALRLPPILVQRVTGEAIISAIFDIKAKRAVVHVAGCRV 614
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 770 ILVADYDHSVEKSKQIYEDKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSKDIVREC 594
+LV + + E+S + + + N+ KL NN +E Q +LQG K+ +++C
Sbjct: 152 VLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 181 LPQVSVGLESTNASLYSRLYMKNKTSLSYLAG 276
LPQV++G S +A L +N+T L+ ++G
Sbjct: 65 LPQVNIGANSFSAETPVDLKKENETELANISG 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,622
Number of Sequences: 5004
Number of extensions: 61718
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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