Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e23
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.4  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -2

Query: 602 RECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 441
           R    +   L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 759 RLRPFR*KEQTDLRGQEERSHHKCRKQTHTKQQ--DELHGVRLPAMAPRLQRYR 604
           R    R +++   R   ERS  + R + + K +  D+LH V    +  R  R R
Sbjct: 233 RYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRR 286


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 110 KPLYPKRTARDFRPRGHCIRTPCGYPR 190
           +P+ P  + ++  PR  CI  P  +PR
Sbjct: 133 RPMGPWISVQEQVPRFRCIGPPTPFPR 159


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 596 TPGRYLWSLGAIAGRRTP 649
           TPG + +S+ A+A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,569
Number of Sequences: 438
Number of extensions: 4488
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)