Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e21
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 35 0.068
06_01_1179 + 10137652-10138038 32 0.48
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 30 1.9
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.5
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.4
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 29 4.4
12_01_0373 + 2897874-2898911 29 5.9
04_04_1429 - 33534021-33534427,33537697-33537862,33539299-335394... 28 7.8
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 7.8
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 35.1 bits (77), Expect = 0.068
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -1
Query: 678 TIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEV 499
T A+ V V ES+ AS+ E D+ +V K + +V + ES +S V
Sbjct: 494 TEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSV 552
Query: 498 INDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 373
+ E SV + +AP +V + P ++ ASA E+I D V
Sbjct: 553 ASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 32.3 bits (70), Expect = 0.48
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 667
AG + + PT +++++ VA P + + F + AGA
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/139 (21%), Positives = 56/139 (40%)
Frame = -1
Query: 819 PKVINDXVSVXSQTFVAAPAXV*XIQLSLQRSKCYRSN***GIGGFQTIVAAPAVVVNDV 640
PK++ND V+V + + P V I L R ++N G G ++V A ++ V
Sbjct: 99 PKIVNDGVTVAKEVELEDP--VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGV 156
Query: 639 IESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIV 460
+ GA+ ++ + +K +V+ + +V +S A + +G+
Sbjct: 157 KVVAAGANPVQITRG-IEKTAKALVSELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAE 215
Query: 459 AAPAVVVNDPIESSTGASA 403
A V + G SA
Sbjct: 216 AMNKVGRQGVVTLEEGKSA 234
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/108 (21%), Positives = 43/108 (39%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S TS + +P S + + + V PT + TS A +P S + + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVWNPPIP 697
+ PT S TS + +P S + + + + ++P P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1723
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 675 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 496
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 495 NDEV 484
++E+
Sbjct: 333 SEEI 336
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 678 FGTHRYLIINYFGSTCSVEDSIGSXTP 758
FGT RY+ IN G T +V+ ++G P
Sbjct: 200 FGTSRYISINQTGITTAVQGTVGYLDP 226
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 494 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 670
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>04_04_1429 -
33534021-33534427,33537697-33537862,33539299-33539496,
33539568-33539810
Length = 337
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 681 GTHRYLIINYFGSTCSVEDSIGSXTPPQXLQQKFGNXP 794
G L NY+GSTC +S Q LQQ F P
Sbjct: 31 GARAQLRQNYYGSTCPNAESTVRSVISQHLQQSFAVGP 68
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,134
Number of Sequences: 37544
Number of extensions: 295216
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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