Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e20
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    44   2e-05
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    35   0.011
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.74 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   1.7  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   3.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.1  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV--TRGLPHELFFKILD 461
           +YG    E IA IK LY ELQ+P  Y  FE+   D +  +I  +  + GL   +F K   
Sbjct: 285 HYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKFFQ 344

Query: 460 NIFRRS 443
            I++RS
Sbjct: 345 LIYKRS 350


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV--TRGLPHELFFKILD 461
           NYG    E+  R+K ++EEL +   +  +EE+    ++  I  V  + GL   +F   L 
Sbjct: 281 NYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340

Query: 460 NIFRRS 443
            I++R+
Sbjct: 341 KIYKRN 346


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 586  YEELQLPHTYSVFEETTYD 530
            YE L LPHTY  FE  T D
Sbjct: 1316 YELLGLPHTYEAFETDTVD 1334


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 256 NFFSCAFIKSSAGAKTYNNLQRV 324
           N + CA  K + GA  YN LQR+
Sbjct: 712 NTYQCAMGKQAIGAIAYNQLQRI 734


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 211 SRTISINHSFLDFDYNFFSCAFIKS 285
           S T+ I     +F+Y FFS AF K+
Sbjct: 218 SATVDIAKKICNFEYRFFSTAFEKA 242


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 65   TKTIIQRTVKLLF*QITVLTTINRYNQV 148
            T  I+QRT++  F   T+LT  +R N V
Sbjct: 1395 TDAIVQRTIRERFNDRTILTIAHRINTV 1422


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 65   TKTIIQRTVKLLF*QITVLTTINRYNQV 148
            T  I+Q+T++  F   T+LT  +R N V
Sbjct: 1397 TDAIVQQTIRKRFKDRTILTVAHRINTV 1424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,882
Number of Sequences: 5004
Number of extensions: 38484
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)