Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e20
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464...    46   2e-05
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535...    43   2e-04
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594...    39   0.003
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605...    36   0.020
01_06_0808 + 32134765-32136570                                         31   1.0  

>01_06_0363 -
           28745581-28745709,28746043-28746114,28746373-28746417,
           28746523-28746618,28747029-28747080,28747232-28747305,
           28747386-28747502,28747844-28747930,28748186-28748281,
           28748508-28748654
          Length = 304

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG + P  +A++KDLY EL L   +S +E  +Y+ L + I+         +    L  I
Sbjct: 240 NYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLHKI 299

Query: 454 FRRS 443
           ++RS
Sbjct: 300 YKRS 303


>01_06_0411 +
           29151647-29151790,29152974-29153039,29153398-29153538,
           29153638-29153724,29153968-29154084,29154177-29154265,
           29154510-29154561,29154667-29154762,29154835-29154879,
           29155002-29155091,29155164-29155235,29155490-29155618
          Length = 375

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG   PE +A++KDLY+EL L   +  +E  +Y+ L   I+         +    L  I
Sbjct: 311 NYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKI 370

Query: 454 FRR 446
           ++R
Sbjct: 371 YKR 373


>04_04_1432 -
           33558895-33559023,33559215-33559286,33559405-33559494,
           33559574-33559618,33559693-33559788,33559905-33559956,
           33560044-33560132,33560226-33560342,33560448-33560534,
           33560646-33560761,33560854-33560878,33561816-33562121
          Length = 407

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG + P+ +A +K +Y EL L   +  +E   Y  L + I   T     ++    L  I
Sbjct: 343 NYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFLKKI 402

Query: 454 FRR 446
           +RR
Sbjct: 403 YRR 405


>05_06_0265 -
           26759960-26760088,26760315-26760386,26760457-26760546,
           26760649-26760693,26760785-26760880,26760980-26761031,
           26761209-26761297,26761388-26761504,26761680-26761737,
           26761834-26761936,26762027-26762051,26762677-26762826
          Length = 341

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG   P  +A++K LY EL L   +  +E  +Y  L   I+         +    L  I
Sbjct: 277 NYGKKDPACVAKVKSLYRELNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKI 336

Query: 454 FRR 446
           ++R
Sbjct: 337 YKR 339


>01_06_0808 + 32134765-32136570
          Length = 601

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 628 GVNKPEAIARIKDLYEELQ--LPHTYSVFEETTYDLLRTQIQQV 503
           G  KPE + R+ D+YE L   LP    +F+E   D++ T+  +V
Sbjct: 286 GPPKPEKLFRLLDMYEVLNDLLPEVEFLFQEGCDDIVLTEYNEV 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,810
Number of Sequences: 37544
Number of extensions: 197473
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)