Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e20
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl ...    53   1e-06
J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.                   53   1e-06
D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.               53   1e-06
BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate sy...    53   1e-06
AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate sy...    53   1e-06
Z47055-1|CAA87327.1|  348|Homo sapiens farnesyl pyrophosphate sy...    51   4e-06
BC050292-1|AAH50292.1|  298|Homo sapiens LOC619190 protein protein.    36   0.090

>M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl
           pyrophosphate synthetase mRNA (hpt807), 3' end. ).
          Length = 346

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E +AR+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 282 NYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKI 341

Query: 454 FRR 446
           ++R
Sbjct: 342 YKR 344


>J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.
          Length = 353

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E +AR+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 289 NYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKI 348

Query: 454 FRR 446
           ++R
Sbjct: 349 YKR 351


>D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.
          Length = 420

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E +AR+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 356 NYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKI 415

Query: 454 FRR 446
           ++R
Sbjct: 416 YKR 418


>BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E +AR+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 355 NYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKI 414

Query: 454 FRR 446
           ++R
Sbjct: 415 YKR 417


>AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E +AR+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 355 NYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKI 414

Query: 454 FRR 446
           ++R
Sbjct: 415 YKR 417


>Z47055-1|CAA87327.1|  348|Homo sapiens farnesyl pyrophosphate
           synthetase like-4 protein.
          Length = 348

 Score = 50.8 bits (116), Expect = 4e-06
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNI 455
           NYG  + E + R+K LYEEL LP  +  +EE +Y  +   I+Q    LP  +F  +   I
Sbjct: 284 NYGQKEAEKVPRVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARQI 343

Query: 454 FRR 446
           ++R
Sbjct: 344 YKR 346


>BC050292-1|AAH50292.1|  298|Homo sapiens LOC619190 protein protein.
          Length = 298

 Score = 36.3 bits (80), Expect = 0.090
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTY 533
           NY   + E +AR+K LYEEL LP  +  +E+ +Y
Sbjct: 257 NYRQKEAEKVARVKALYEELDLPAVFLQYEKDSY 290


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,282,208
Number of Sequences: 237096
Number of extensions: 1123659
Number of successful extensions: 1502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)