Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e20
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    31   0.91 
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 634 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV 503
           ++G   PE + +IK +Y+ELQL   +  FE+     ++  I ++
Sbjct: 286 SFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEI 329


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 226 INHSFLDFDYNFFSCAFIKSSAGAKTYNNLQRV*DRHLHF 345
           I+H + + + NFF C FIK+  G +  + +  + D H+HF
Sbjct: 9   ISHGY-EQNKNFFKCRFIKNRRGDEC-DFVGTLSDTHIHF 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,943,346
Number of Sequences: 27780
Number of extensions: 211751
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)