Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e18
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     34   0.17 
06_01_1179 + 10137652-10138038                                         31   1.6  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           29   6.5  
12_01_0373 + 2897874-2898911                                           29   6.5  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   8.6  

>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = -2

Query: 642 VIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTI 463
           V ES+  AS+ E   D+ +V  K +    +V   +  ES   +S   V + E SV +   
Sbjct: 506 VEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSVASTE-SVTAVVE 563

Query: 462 VAAP--AVVVNDPIESSTGASATEVINDEALV 373
            +AP  +V +  P   ++ ASA E+I D   V
Sbjct: 564 ESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595


>06_01_1179 + 10137652-10138038
          Length = 128

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
           +  A++ I++ A AP E      + +  AAT    PT  S+      A AP     TS  
Sbjct: 12  ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69

Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVE 631
             AG   + + PT  +++++ VA  P +
Sbjct: 70  APAGGDEVSIPPTPFATVVSPVADGPAD 97


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 390 NDE 382
           ++E
Sbjct: 333 SEE 335


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,355
Number of Sequences: 37544
Number of extensions: 281480
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)