Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e17
         (396 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    25   1.3  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   3.1  
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    23   4.1  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    23   5.4  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    22   9.4  

>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 268 FEMKFHIIKCR----FGINQNLYGINNNPKIVLIQFIGK 372
           F +  H++ C+     G    +  INN P+I L Q +GK
Sbjct: 351 FGIGTHLVTCQRQPALGCVYKMVEINNQPRIKLSQDVGK 389


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 55  VFLIHPYNINLSHRGIDKDKDIVKCL 132
           VF+I P+    S+ GI+K + +++CL
Sbjct: 35  VFIIDPWFAGSSNVGINKWRFLLQCL 60


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 307 INQNLYGINNNPKIVLIQFI 366
           IN+NLYG  +N   VL+ FI
Sbjct: 370 INRNLYGDVHNMGHVLLAFI 389


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 244 VLNSLCNFFEMKFH 285
           V+N++C FF M +H
Sbjct: 796 VINTVCGFFGMPWH 809


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 21   SVXNYMNNYVICIFNS 68
            +V +Y+N   ICIF+S
Sbjct: 1653 AVLDYLNMIFICIFSS 1668


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,329
Number of Sequences: 2352
Number of extensions: 3489
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)