Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e16
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    88   1e-18
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    62   8e-11
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   2.6  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 46/131 (35%), Positives = 74/131 (56%)
 Frame = -2

Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
           SQLITQR++VS L+R  L++RAA FNI+LDDVSLT + F  E+T                
Sbjct: 146 SQLITQRERVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRA 205

Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
               +RA+ E+Q  IV+                  PG+++LRK+  A+ I+ ++++S N+
Sbjct: 206 TFYVDRARMEKQGFIVRAQGEGRAAQLIGEAIKNKPGFIELRKLETAREIANILSKSNNK 265

Query: 272 VFLPGNSLMIN 240
           V L  ++L+++
Sbjct: 266 VMLNASTLLLD 276



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3

Query: 706 DYDEKVLPSICNEVXK 659
           DYDE+VLPSI NEV K
Sbjct: 122 DYDERVLPSIVNEVLK 137


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
 Frame = -2

Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
           ++LITQR+ VS  IR+ELV+RA +F I L+DVS+T ++FGKE+T                
Sbjct: 136 AELITQREVVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERA 195

Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYL-KLRKIRAAQSISRMIAQSQN 276
               E+++QERQ  +++                   G L ++R++  ++ ++  +A    
Sbjct: 196 RFLVEQSEQERQANVIRAEGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGA 255

Query: 275 RV-FLP 261
           +V +LP
Sbjct: 256 QVTYLP 261



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 706 DYDEKVLPSICNEVXK 659
           DYDE+VLPSI NE+ K
Sbjct: 112 DYDERVLPSIGNEILK 127


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 105 CCFSCCLVFGLFSKSQFKQFNLCILS 28
           CC  CCL   +F+K+    F + ILS
Sbjct: 216 CCILCCLGSAIFAKASNALFVVIILS 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,960
Number of Sequences: 5004
Number of extensions: 36083
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)