Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e16
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 102 3e-22
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 99 4e-21
02_04_0362 - 22366668-22367516 72 4e-13
04_04_0143 - 23091613-23092467 70 2e-12
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 64 1e-10
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 29 3.6
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 28 8.4
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 28 8.4
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 102 bits (244), Expect = 3e-22
Identities = 58/143 (40%), Positives = 80/143 (55%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQR+ VS IR+ L ERA +FNI LDDVS+T LSFGKE+T
Sbjct: 219 SQLITQRETVSREIRKILTERARNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERA 278
Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
E+A+Q+++ I++ NP +L LR+I AA+ IS ++ S N+
Sbjct: 279 KFIVEKAEQDKRSAIIRAQGEAKSAELIGQAIANNPAFLALRQIEAAREISHTMSSSANK 338
Query: 272 VFLPGNSLMINLQDPTFDDLSEK 204
VFL N L++NLQ T + S+K
Sbjct: 339 VFLDSNDLLLNLQQLTVANKSKK 361
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 98.7 bits (235), Expect = 4e-21
Identities = 55/143 (38%), Positives = 79/143 (55%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQR+ VS IR+ L ERA++FNI LDDVS+T LSFGKE+T
Sbjct: 141 SQLITQREAVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERA 200
Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
E+A+Q+++ I++ NP +L LR+I AA+ IS +A S N+
Sbjct: 201 KFIVEKAEQDKRSAIIRAQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMASSNNK 260
Query: 272 VFLPGNSLMINLQDPTFDDLSEK 204
V+L L++ LQ D+ ++K
Sbjct: 261 VYLDSKDLLLGLQQLNVDNKNKK 283
>02_04_0362 - 22366668-22367516
Length = 282
Score = 72.1 bits (169), Expect = 4e-13
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = -2
Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
QL+T+R VS L+R L+ RAA+FNI+LDDV++T L++G E++
Sbjct: 144 QLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSR 203
Query: 449 XXXERAKQERQQKIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
RA+QER+ IV+ G ++LR+I AA+ I+ +A+S N
Sbjct: 204 FLVARAEQERRAAIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNV 263
Query: 272 VFLP 261
++P
Sbjct: 264 SYIP 267
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
+YDEKVLPSI NEV K
Sbjct: 119 EYDEKVLPSIGNEVLK 134
>04_04_0143 - 23091613-23092467
Length = 284
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Frame = -2
Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
QL+T+R VS L+R L+ RA +FNIILDDV++T LS+G E++
Sbjct: 143 QLLTERPHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSK 202
Query: 449 XXXERAKQERQQKIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
+A+QER+ IV+ G ++LR+I AA+ I+ +A+S N
Sbjct: 203 FLVAKAEQERRAAIVRAEGESESARLISEATAAAGTGLIELRRIEAAREIAAELARSPNV 262
Query: 272 VFLP 261
++P
Sbjct: 263 AYVP 266
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
+YD+KVLPSI NEV K
Sbjct: 118 EYDDKVLPSIGNEVLK 133
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 501
SQLITQR+ VS IR+ L ERA++FNI LDDVS+T LSFGKE+T
Sbjct: 306 SQLITQREAVSREIRKILTERASNFNIALDDVSITSLSFGKEFT 349
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -2
Query: 350 NPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMINLQDPTFDDLSEK 204
NP +L LR+I AA+ IS +A+S N+V+L L++ LQ D ++K
Sbjct: 372 NPAFLALRQIEAAREISHTMARSNNKVYLDSKDLLLGLQQLNVDSKNKK 420
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 605 VSLLIRRELVERAADFNIILDDVSLTELSFGKE 507
VS R+E+VERAA +I++ + +LS+ E
Sbjct: 101 VSTKKRKEIVERAAQLDIVISTLKFIQLSYDYE 133
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 144 RHSKRRNYSHNQWCCFSCCLVFGLFS 67
+H +R++ H QW C C + + S
Sbjct: 132 KHFRRKHSGHRQWACARCSKAYAVHS 157
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 144 RHSKRRNYSHNQWCCFSCCLVFGLFS 67
+H +R++ H QW C C + + S
Sbjct: 131 KHFRRKHSGHRQWACSRCSKAYAVHS 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,326
Number of Sequences: 37544
Number of extensions: 220271
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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