Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e16
         (711 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    24   4.1  
AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450 CY...    24   4.1  
AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin rece...    23   9.5  
AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant r...    23   9.5  

>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 123 YSHNQWCCFSCCLVFGLFSKSQF 55
           YS+++  C  C    GLFS  +F
Sbjct: 247 YSYDEQSCIECAECRGLFSPQKF 269


>AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450
           CYP6P3 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 269 RHGSEIEQSFSKYFEQ 316
           RHG++I Q   +YF+Q
Sbjct: 54  RHGADIHQELYRYFKQ 69


>AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin
           receptor protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 NYKSCTLSLLLCNLFSFYCSCVFLTKA*FSEGYIIKDNIKI 563
           N + C +S  L  +FS Y  C FL    +   + I+ N+++
Sbjct: 166 NRQWCDMSKTLAAIFSSYVVCPFLAVPIYL-SFSIQSNVEL 205


>AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant
           receptor Or1 protein.
          Length = 417

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 151 FRFSAHTLSASCYFFLVSFSDKSSKVGS 234
           F+F   T  A  +F  ++  D   KVGS
Sbjct: 359 FKFDKRTSQAMIFFLQMTLKDVHIKVGS 386


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,401
Number of Sequences: 2352
Number of extensions: 8957
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)