Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e16
(711 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061508-1|AAL29056.1| 299|Drosophila melanogaster LD46344p pro... 165 7e-41
AE013599-2777|AAM68447.1| 243|Drosophila melanogaster CG15081-P... 98 9e-21
AE013599-2776|AAF57631.2| 243|Drosophila melanogaster CG15081-P... 98 9e-21
AE013599-2775|AAF57632.2| 243|Drosophila melanogaster CG15081-P... 98 9e-21
AY122111-1|AAM52623.1| 276|Drosophila melanogaster GH12454p pro... 69 8e-12
AE014134-3047|AAF53765.1| 276|Drosophila melanogaster CG10691-P... 69 8e-12
AE014134-3046|AAN11026.1| 276|Drosophila melanogaster CG10691-P... 69 8e-12
X04228-3|CAA27810.1| 203|Drosophila melanogaster protein ( Dros... 44 3e-04
X04227-3|CAA27807.1| 203|Drosophila melanogaster URF 3 protein. 44 3e-04
>AY061508-1|AAL29056.1| 299|Drosophila melanogaster LD46344p
protein.
Length = 299
Score = 165 bits (400), Expect = 7e-41
Identities = 89/148 (60%), Positives = 101/148 (68%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQRQQVSLLIR+ELVERA DFNIILDDVSLTELSFGKEYT
Sbjct: 152 SQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
ERAKQE+QQKIVQ NP YLKLRK+RAAQSI+R IA SQN+
Sbjct: 212 VFFVERAKQEKQQKIVQAEGEAEAAKMLGLAVKQNPAYLKLRKLRAAQSIARTIASSQNK 271
Query: 272 VFLPGNSLMINLQDPTFDDLSEKLTKKK 189
V+L +SLM+N+QD FDD++EK+ K K
Sbjct: 272 VYLSADSLMLNIQDSGFDDMTEKVYKSK 299
Score = 36.3 bits (80), Expect = 0.041
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
DYDEKVLPSICNEV K
Sbjct: 128 DYDEKVLPSICNEVLK 143
>AE013599-2777|AAM68447.1| 243|Drosophila melanogaster CG15081-PC,
isoform C protein.
Length = 243
Score = 98.3 bits (234), Expect = 9e-21
Identities = 54/77 (70%), Positives = 56/77 (72%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQRQQVSLLIR+ELVERA DFNIILDDVSLTELSFGKEYT
Sbjct: 152 SQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
Query: 452 XXXXERAKQERQQKIVQ 402
ERAKQE+QQKIVQ
Sbjct: 212 VFFVERAKQEKQQKIVQ 228
Score = 36.3 bits (80), Expect = 0.041
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
DYDEKVLPSICNEV K
Sbjct: 128 DYDEKVLPSICNEVLK 143
>AE013599-2776|AAF57631.2| 243|Drosophila melanogaster CG15081-PB,
isoform B protein.
Length = 243
Score = 98.3 bits (234), Expect = 9e-21
Identities = 54/77 (70%), Positives = 56/77 (72%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQRQQVSLLIR+ELVERA DFNIILDDVSLTELSFGKEYT
Sbjct: 152 SQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
Query: 452 XXXXERAKQERQQKIVQ 402
ERAKQE+QQKIVQ
Sbjct: 212 VFFVERAKQEKQQKIVQ 228
Score = 36.3 bits (80), Expect = 0.041
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
DYDEKVLPSICNEV K
Sbjct: 128 DYDEKVLPSICNEVLK 143
>AE013599-2775|AAF57632.2| 243|Drosophila melanogaster CG15081-PA,
isoform A protein.
Length = 243
Score = 98.3 bits (234), Expect = 9e-21
Identities = 54/77 (70%), Positives = 56/77 (72%)
Frame = -2
Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
SQLITQRQQVSLLIR+ELVERA DFNIILDDVSLTELSFGKEYT
Sbjct: 152 SQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRA 211
Query: 452 XXXXERAKQERQQKIVQ 402
ERAKQE+QQKIVQ
Sbjct: 212 VFFVERAKQEKQQKIVQ 228
Score = 36.3 bits (80), Expect = 0.041
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 706 DYDEKVLPSICNEVXK 659
DYDEKVLPSICNEV K
Sbjct: 128 DYDEKVLPSICNEVLK 143
>AY122111-1|AAM52623.1| 276|Drosophila melanogaster GH12454p
protein.
Length = 276
Score = 68.5 bits (160), Expect = 8e-12
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = -2
Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
+LITQR+ VS + +EL RA F ILDD+SLT L+FG+E+T
Sbjct: 138 ELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKAR 197
Query: 449 XXXERAKQERQQKIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
E+A+Q++ I+ G ++LR+I AA+ I+ +++S+
Sbjct: 198 FVVEKAEQQKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGV 257
Query: 272 VFLP-GNSLMINL 237
+LP G S ++NL
Sbjct: 258 AYLPSGQSTLLNL 270
>AE014134-3047|AAF53765.1| 276|Drosophila melanogaster CG10691-PB,
isoform B protein.
Length = 276
Score = 68.5 bits (160), Expect = 8e-12
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = -2
Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
+LITQR+ VS + +EL RA F ILDD+SLT L+FG+E+T
Sbjct: 138 ELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKAR 197
Query: 449 XXXERAKQERQQKIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
E+A+Q++ I+ G ++LR+I AA+ I+ +++S+
Sbjct: 198 FVVEKAEQQKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGV 257
Query: 272 VFLP-GNSLMINL 237
+LP G S ++NL
Sbjct: 258 AYLPSGQSTLLNL 270
>AE014134-3046|AAN11026.1| 276|Drosophila melanogaster CG10691-PA,
isoform A protein.
Length = 276
Score = 68.5 bits (160), Expect = 8e-12
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = -2
Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
+LITQR+ VS + +EL RA F ILDD+SLT L+FG+E+T
Sbjct: 138 ELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKAR 197
Query: 449 XXXERAKQERQQKIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
E+A+Q++ I+ G ++LR+I AA+ I+ +++S+
Sbjct: 198 FVVEKAEQQKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGV 257
Query: 272 VFLP-GNSLMINL 237
+LP G S ++NL
Sbjct: 258 AYLPSGQSTLLNL 270
>X04228-3|CAA27810.1| 203|Drosophila melanogaster protein (
Drosophila mRNA forCc gene from dopa decarboxylase gene
cluster; mapping2.0 kb from the 5'end of Ddc gene. ).
Length = 203
Score = 43.6 bits (98), Expect = 3e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -2
Query: 611 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 501
+ VS + +EL RA F ILDD+SLT L+FG+E+T
Sbjct: 67 EMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFT 103
>X04227-3|CAA27807.1| 203|Drosophila melanogaster URF 3 protein.
Length = 203
Score = 43.6 bits (98), Expect = 3e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -2
Query: 611 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 501
+ VS + +EL RA F ILDD+SLT L+FG+E+T
Sbjct: 67 EMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFT 103
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,507,404
Number of Sequences: 53049
Number of extensions: 404738
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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