Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e16
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   129   2e-30
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...    65   5e-11

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  129 bits (311), Expect = 2e-30
 Identities = 66/143 (46%), Positives = 92/143 (64%)
 Frame = -2

Query: 632 SQLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXX 453
           SQLITQRQQVS+L+R+ L+ERA DFNIILDDVSLTEL+F  +Y+                
Sbjct: 150 SQLITQRQQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRA 209

Query: 452 XXXXERAKQERQQKIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
               ERAKQ++Q+KIVQ                 +PG+LKLRKIRAAQ I+R++++S N+
Sbjct: 210 TFYVERAKQQKQEKIVQAEGEAESAKLLGEAMKNDPGFLKLRKIRAAQKIARIVSESGNK 269

Query: 272 VFLPGNSLMINLQDPTFDDLSEK 204
            +LP   LM+N+ D  + ++++K
Sbjct: 270 TYLPTGGLMLNIADTDYLNVTDK 292



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = -3

Query: 706 DYDEKVLPSICNEVXK 659
           +++E+VLPSICNEV K
Sbjct: 126 NWEERVLPSICNEVLK 141


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
 Frame = -2

Query: 629 QLITQRQQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXX 450
           ++ITQR+ VS      L ERAA F ++LDD+++T L+FG+E+T                 
Sbjct: 141 EMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKAR 200

Query: 449 XXXERAKQERQQKI-VQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNR 273
              E+A+Q +   +                      G ++LRKI AA+ I+  +A+++N 
Sbjct: 201 YLVEKAEQMKIAAVTTAEGDAQAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNV 260

Query: 272 VFLPGN-SLMINLQ 234
            +LPGN   ++NLQ
Sbjct: 261 TYLPGNQQTLLNLQ 274



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -3

Query: 706 DYDEKVLPSICNEVXK 659
           DY E+VLPSI NEV K
Sbjct: 116 DYAERVLPSITNEVLK 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,536
Number of Sequences: 27780
Number of extensions: 207311
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)