Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e14
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   2.3  
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical ...    29   4.0  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.2  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = -1

Query: 418 PANERLAYGDGKEKNSDLI--SWKFITLW----ENNRVYFKIHNTKYN-QYLKLSSTTDC 260
           PA + +   D K    DL+  S  ++ LW    +NN     + NT    +Y    ++ D 
Sbjct: 204 PATKIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNACIESLLNTNRTAEYCAPLTSFDW 263

Query: 259 NTQDRVIFGTNTADTTREQWFLQ 191
           N  D  + GT++ DTT   W L+
Sbjct: 264 NELDMNLIGTSSIDTTCTVWQLE 286


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 675 TTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSESTSPITLD 496
           TT  S  +  T T A +                T  ST  S  ++TDST +EST+  T +
Sbjct: 181 TTTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTE 240

Query: 495 SS 490
           S+
Sbjct: 241 ST 242


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 382 EKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQ 203
           EKN D    K     + N + +   +T Y   + L S  DCN     +F  N ADT  ++
Sbjct: 115 EKNPDFFKMK-----DGNHIVYDGQSTLYTT-INLFSELDCNQTKSKVFQINGADTGNDE 168


>AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical
           protein Y54G11A.4 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 238 FGTNTADTTREQWFLQPTKYENDVLFFIYNREYNDALKL 122
           F   T D  R+ W L    Y +  LF I + EY  AL++
Sbjct: 236 FMYKTEDDWRQGWMLAAHNYWHTALFHIESAEYEPALEI 274


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 184 KYENDVLFFIYNREYND 134
           KY N    F YNREYND
Sbjct: 29  KYNNPPFCFAYNREYND 45


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 236 RHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCFE 126
           +H H+ HH  +++PP      R P L   S   R FE
Sbjct: 854 QHHHQSHHHPSLIPPT-TTSIRSPTLGPPSSQDRSFE 889


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical protein
            C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 236  RHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCFE 126
            +H H+ HH  +++PP      R P L   S   R FE
Sbjct: 920  QHHHQSHHHPSLIPPT-TTSIRSPTLGPPSSQDRSFE 955


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 228 LVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASL 407
           L  NI+    +    + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   
Sbjct: 7   LSSNISYDDPISFECDTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFREN 66

Query: 408 SF 413
           SF
Sbjct: 67  SF 68


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 192 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 371
           W  H S     + + NIT      S++E   + W YL   ++    L + K+ N   ++S
Sbjct: 418 WNLHLSKSDFFIFLINITY--FASSLIEEEHEIWYYLGSTVVAIRALRNFKIWNKTEVKS 475

Query: 372 LFF 380
           +FF
Sbjct: 476 IFF 478


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 192 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 371
           W  H S     + + NIT      S++E   + W YL   ++    L + K+ N   ++S
Sbjct: 418 WNLHLSKSDFFIFLINITY--FASSLIEEEHEIWYYLGSTVVAIRALRNFKIWNKTEVKS 475

Query: 372 LFF 380
           +FF
Sbjct: 476 IFF 478


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 124 LGRIVDASGDRMAFGHDGEVAGLPD 50
           LGR+ D  GD +  G DGE    PD
Sbjct: 223 LGRLHDLHGDSITVGADGEKVDRPD 247


>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 215 HQGAVVPPAHEVRKRRPV 162
           H GAV PP+ ++R  RP+
Sbjct: 300 HMGAVYPPSQQIRMGRPI 317


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = -3

Query: 374  QRPH-QLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRHHQGAVV 198
            Q PH Q + H ++ + Q   Q  Q  VQ V   +    LQ+       HQ + H Q    
Sbjct: 1016 QNPHNQQQQHQMLHQSQMNYQQVQQ-VQQVQHVQQQQNLQNQH----HHQQQHHQQNQQQ 1070

Query: 197  PPAHEVRKRRPVLHLQSRVQR 135
             P +  R    V  ++   QR
Sbjct: 1071 APGNRSRSHSNVGKMEQEAQR 1091


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 526 QCAVRCRPTACSSTPWCSDSC 588
           QC + C+PT   + P C   C
Sbjct: 225 QCTLECQPTCQQAVPQCQQQC 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,521
Number of Sequences: 27780
Number of extensions: 305371
Number of successful extensions: 990
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)