Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e13
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   2.1  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   3.7  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    23   6.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   6.5  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    23   6.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    23   8.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   8.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    23   8.5  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 235 NLPAAKLGSSAAERLVFSSYRP 170
           N+P A+LGSSA+++    ++ P
Sbjct: 351 NMPTAELGSSASQKYDIEAWMP 372


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 133 SYTIRNYPLAPRSVDNC*KPTALLRCYQV*LPEGCNKKHWQPVQCVS 273
           SY   +Y ++P S ++     A    YQ     G +K HW+P   VS
Sbjct: 115 SYQAMSYSVSPTSTNSS---VATSLNYQSSRETGISKDHWKPDSDVS 158


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 216 LVAAQQSGWFSAVIDRTRSKRIIT 145
           L + Q SGW   ++D+  S RI T
Sbjct: 141 LASIQGSGWAWLIVDKDGSLRITT 164


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/55 (21%), Positives = 33/55 (60%)
 Frame = -3

Query: 220 KLGSSAAERLVFSSYRPNEEQEDNYVLYSCLDSFTLLLVAYP*VGTSLCLIIQMT 56
           ++ ++  +R +  + +  + Q+ +Y+L +C++S+ +LL   P +   L +I++ T
Sbjct: 60  QISANHGKRQISKASQEQKLQDISYLLRTCVESY-ILLFREPHILALLDIILRHT 113


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 145 VLYSCLDSFTLLLVAY 98
           VLY+CL  F LL + Y
Sbjct: 6   VLYTCLAGFILLFLVY 21


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 158 LLLVRSITAENQPLCCAATKFSCRKVAIKN 247
           LLL + + A N  +   A+  + R++AIKN
Sbjct: 155 LLLCQMLRARNVHVIATASTAAKRRIAIKN 184


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 136 YTIRNYPLAPRSVDNC*KPTALLRCYQV*LP 228
           YTI  +PL  R  DN    T +L+  ++  P
Sbjct: 19  YTINGFPLMKRCHDNWLNATQILKIAELDKP 49


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 139 TIRNYPLAPRSVDNC 183
           T  N+ L P+S DNC
Sbjct: 48  TASNFELNPKSTDNC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,331
Number of Sequences: 5004
Number of extensions: 17329
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)