Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e13
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654...    27   2.3  
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243...    26   5.4  
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908...    26   5.4  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    26   5.4  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    25   7.1  
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    25   7.1  
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    25   7.1  

>07_03_0670 +
           20562188-20562923,20564288-20564826,20564967-20565458,
           20566803-20567018
          Length = 660

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 226 AAKLGSSAAERLVFSSYRPNEEQEDNY-VLYSC 131
           AA  GS    RL+  +YR +EE+E+   VL SC
Sbjct: 196 AAAAGSLGMVRLLTKTYRNDEEEEEELPVLCSC 228


>07_03_1521 +
           27419859-27420106,27422050-27423363,27423885-27424308,
           27424540-27424968,27425228-27425305,27426581-27426839,
           27428542-27428552
          Length = 920

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 92  LWICNQKQSKRI*TAIQY--VIILLLLVRSITAENQPLC 202
           +W+    Q K +  A+    +IILL L ++I+ E QPLC
Sbjct: 121 VWVLLVLQKKIVMAAVVVYAMIILLALGQNISPEFQPLC 159


>04_04_0775 -
           27989704-27990281,27990407-27990653,27990743-27990837,
           27990918-27992388,27993142-27993194,27993295-27993430
          Length = 859

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 271 IHTEPAANVFYCNLPAAKLGSSAAERLVFSSYRPN-EEQEDNYVLYSCLDSF 119
           +HT    N  + + P+A +G +    L FS    N +++E+     S LDSF
Sbjct: 602 LHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSF 653


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 235 NLPAAKLGSSAAERLVFSSYRPNEEQEDNYVLYS 134
           NLP  ++  SA + L+ S  +  EEQE   VL+S
Sbjct: 296 NLPKLQMFKSAIDVLITSLEKHQEEQEIYSVLFS 329


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 ENQPLCCAATKFSCRKVAIKNIGSRFS 265
           E QPL C  ++ SC  +AI N+G  ++
Sbjct: 813 EMQPLLCTRSEASCASLAI-NLGDSYN 838


>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 232 LPAAKLGSSAAERLVFSSYRPNEEQ 158
           L  AKL SSAAE  +  S+ P +E+
Sbjct: 826 LEQAKLASSAAEETLTGSFNPVQER 850


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 235 NLPAAKLGSSAAERLVFSSYRPNEEQEDNYVL 140
           NLP + LGSS   + + SS+  N +   N  L
Sbjct: 377 NLPVSGLGSSRGSQFMASSFNGNHDIVSNNTL 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,378,659
Number of Sequences: 37544
Number of extensions: 104596
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)