Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e13
         (285 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA ...    27   3.7  
AY069793-1|AAL39938.1|  894|Drosophila melanogaster SD03467p pro...    27   4.9  
AE014134-605|AAF51106.1|  894|Drosophila melanogaster CG8843-PA ...    27   4.9  
U43588-1|AAC46972.1|  395|Drosophila melanogaster geranylgeranyl...    26   6.5  
U43587-1|AAC46971.1|  395|Drosophila melanogaster geranylgeranyl...    26   6.5  
AY119246-1|AAM51106.1|  395|Drosophila melanogaster SD20823p pro...    26   6.5  
AE014134-811|AAF52177.1|  395|Drosophila melanogaster CG3469-PA ...    26   6.5  

>AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA
            protein.
          Length = 4056

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 277  ELIHTEPAANVFYCNLPAAKLGSSAAERLVFSSYRPNEEQEDNYVLYS 134
            E++ T+P  +  Y N     + SS A+    SS   N E+ D  ++YS
Sbjct: 2630 EVVLTQPFHDSTYMNTKVTDIVSSVAQFNNSSSSAMNYEESDYLIIYS 2677


>AY069793-1|AAL39938.1|  894|Drosophila melanogaster SD03467p
           protein.
          Length = 894

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 173 SITAENQPLCCAATKFSCRKVAIKNIGSRFSVY 271
           ++T E + LCC A    C K+    +G  F  Y
Sbjct: 679 AVTWEQRMLCCLANYAYCNKIFFPRLGDIFVRY 711


>AE014134-605|AAF51106.1|  894|Drosophila melanogaster CG8843-PA
           protein.
          Length = 894

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 173 SITAENQPLCCAATKFSCRKVAIKNIGSRFSVY 271
           ++T E + LCC A    C K+    +G  F  Y
Sbjct: 679 AVTWEQRMLCCLANYAYCNKIFFPRLGDIFVRY 711


>U43588-1|AAC46972.1|  395|Drosophila melanogaster geranylgeranyl
           transferase beta-subunit type I protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 213 VAAQQS--GWFSAVIDRTRSKRIITYCIAV*IRLLCFWLHIHK 91
           VAA Q   G FSA ID +       YC A    +L +W  ++K
Sbjct: 142 VAAVQKPEGSFSACIDGSEDDMRFVYCAATICYMLDYWGDVNK 184


>U43587-1|AAC46971.1|  395|Drosophila melanogaster geranylgeranyl
           transferase beta-subunit type I protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 213 VAAQQS--GWFSAVIDRTRSKRIITYCIAV*IRLLCFWLHIHK 91
           VAA Q   G FSA ID +       YC A    +L +W  ++K
Sbjct: 142 VAAVQKPEGSFSACIDGSEDDMRFVYCAATICYMLDYWGDVNK 184


>AY119246-1|AAM51106.1|  395|Drosophila melanogaster SD20823p
           protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 213 VAAQQS--GWFSAVIDRTRSKRIITYCIAV*IRLLCFWLHIHK 91
           VAA Q   G FSA ID +       YC A    +L +W  ++K
Sbjct: 142 VAAVQKPEGSFSACIDGSEDDMRFVYCAATICYMLDYWGDVNK 184


>AE014134-811|AAF52177.1|  395|Drosophila melanogaster CG3469-PA
           protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 213 VAAQQS--GWFSAVIDRTRSKRIITYCIAV*IRLLCFWLHIHK 91
           VAA Q   G FSA ID +       YC A    +L +W  ++K
Sbjct: 142 VAAVQKPEGSFSACIDGSEDDMRFVYCAATICYMLDYWGDVNK 184


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,738
Number of Sequences: 53049
Number of extensions: 184315
Number of successful extensions: 384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 465714480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)